miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12793 3' -54.5 NC_003387.1 + 27889 0.67 0.688796
Target:  5'- cCCG-GCCGCaGACAgcgcacacGCGGCCUUgAc -3'
miRNA:   3'- -GGCuUGGCG-CUGUau------CGCCGGAAgUa -5'
12793 3' -54.5 NC_003387.1 + 16758 0.67 0.688796
Target:  5'- gCCGAggGCCuccuCGACc--GCGGCCUUCGc -3'
miRNA:   3'- -GGCU--UGGc---GCUGuauCGCCGGAAGUa -5'
12793 3' -54.5 NC_003387.1 + 52515 0.67 0.666751
Target:  5'- aCCGcGACaagaGCGACAagccgccgagcUGGCGGCCgggcgUCAc -3'
miRNA:   3'- -GGC-UUGg---CGCUGU-----------AUCGCCGGa----AGUa -5'
12793 3' -54.5 NC_003387.1 + 39079 0.67 0.666751
Target:  5'- aCCGAGCCGCcgccGAC--GGUGGCCg---- -3'
miRNA:   3'- -GGCUUGGCG----CUGuaUCGCCGGaagua -5'
12793 3' -54.5 NC_003387.1 + 22170 0.67 0.666751
Target:  5'- aCCG-GCCGCGGC--GGCGGUCcaugUCGg -3'
miRNA:   3'- -GGCuUGGCGCUGuaUCGCCGGa---AGUa -5'
12793 3' -54.5 NC_003387.1 + 35204 0.67 0.666751
Target:  5'- gCCGAGCCGCugcGCAUGcUGGCCgagCAc -3'
miRNA:   3'- -GGCUUGGCGc--UGUAUcGCCGGaa-GUa -5'
12793 3' -54.5 NC_003387.1 + 41786 0.67 0.655673
Target:  5'- gCCGGgcgcguGCCGCGACcUGGCGcacGCCUggCAg -3'
miRNA:   3'- -GGCU------UGGCGCUGuAUCGC---CGGAa-GUa -5'
12793 3' -54.5 NC_003387.1 + 45879 0.67 0.655673
Target:  5'- gCGcGCCGCGGCcgAGCgGGCgaUCGa -3'
miRNA:   3'- gGCuUGGCGCUGuaUCG-CCGgaAGUa -5'
12793 3' -54.5 NC_003387.1 + 14673 0.67 0.655673
Target:  5'- gCGAACCGCGGCAcgugggagUcGUGGCCg---- -3'
miRNA:   3'- gGCUUGGCGCUGU--------AuCGCCGGaagua -5'
12793 3' -54.5 NC_003387.1 + 4033 0.68 0.644573
Target:  5'- -aGAACCGCG---UGGCGGCCUc--- -3'
miRNA:   3'- ggCUUGGCGCuguAUCGCCGGAagua -5'
12793 3' -54.5 NC_003387.1 + 7771 0.68 0.644573
Target:  5'- cCUGAGCCGCGGCcu-Ga-GCCUUCGc -3'
miRNA:   3'- -GGCUUGGCGCUGuauCgcCGGAAGUa -5'
12793 3' -54.5 NC_003387.1 + 46949 0.68 0.633461
Target:  5'- gUCGAuCCGCGGCGagcGCGGCCg---- -3'
miRNA:   3'- -GGCUuGGCGCUGUau-CGCCGGaagua -5'
12793 3' -54.5 NC_003387.1 + 34466 0.68 0.589101
Target:  5'- gUGGAUCGuCGACAUGGCGGCg----- -3'
miRNA:   3'- gGCUUGGC-GCUGUAUCGCCGgaagua -5'
12793 3' -54.5 NC_003387.1 + 18299 0.69 0.582484
Target:  5'- gCCGAcccgGCCGCGGCGgUGGCgcccggcaacggcguGGCCgUCGUg -3'
miRNA:   3'- -GGCU----UGGCGCUGU-AUCG---------------CCGGaAGUA- -5'
12793 3' -54.5 NC_003387.1 + 1686 0.69 0.578081
Target:  5'- aCCGAcACCGCGGC--GGCGGUCg---- -3'
miRNA:   3'- -GGCU-UGGCGCUGuaUCGCCGGaagua -5'
12793 3' -54.5 NC_003387.1 + 22693 0.69 0.534534
Target:  5'- gUCG-ACgGCGGCGcUGGCGGCCUgggCGa -3'
miRNA:   3'- -GGCuUGgCGCUGU-AUCGCCGGAa--GUa -5'
12793 3' -54.5 NC_003387.1 + 26440 0.7 0.502647
Target:  5'- gCCGAGCauuGCGACGUuGCGGUCgagCAc -3'
miRNA:   3'- -GGCUUGg--CGCUGUAuCGCCGGaa-GUa -5'
12793 3' -54.5 NC_003387.1 + 8189 0.7 0.492201
Target:  5'- uUCGAGCCcuGCGGCGccgGGCGGCCcggCAc -3'
miRNA:   3'- -GGCUUGG--CGCUGUa--UCGCCGGaa-GUa -5'
12793 3' -54.5 NC_003387.1 + 40873 0.7 0.492201
Target:  5'- cCCccGCCGCGAuCAUgucccaGGCGGCCUUgAUg -3'
miRNA:   3'- -GGcuUGGCGCU-GUA------UCGCCGGAAgUA- -5'
12793 3' -54.5 NC_003387.1 + 22447 0.7 0.492201
Target:  5'- gCGGGCCGCGGCGU--UGGCCUcgCGg -3'
miRNA:   3'- gGCUUGGCGCUGUAucGCCGGAa-GUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.