miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12793 5' -52.1 NC_003387.1 + 41720 1.06 0.002616
Target:  5'- cCAACGAAACUGCCGCCCAUACCCUUUg -3'
miRNA:   3'- -GUUGCUUUGACGGCGGGUAUGGGAAA- -5'
12793 5' -52.1 NC_003387.1 + 35157 0.73 0.428958
Target:  5'- cCAGCGggGCguUGUCGCCCuugucACCCUUc -3'
miRNA:   3'- -GUUGCuuUG--ACGGCGGGua---UGGGAAa -5'
12793 5' -52.1 NC_003387.1 + 15349 0.71 0.512813
Target:  5'- aCAGCGggGCgccGCCGCCCgacagGUGCCg--- -3'
miRNA:   3'- -GUUGCuuUGa--CGGCGGG-----UAUGGgaaa -5'
12793 5' -52.1 NC_003387.1 + 32975 0.71 0.512813
Target:  5'- cCGGCGAGGCcGCCGaCCUucGUACCCg-- -3'
miRNA:   3'- -GUUGCUUUGaCGGC-GGG--UAUGGGaaa -5'
12793 5' -52.1 NC_003387.1 + 40409 0.7 0.625571
Target:  5'- -cGCGAGgauGCUGUCGCUCGUGCCg--- -3'
miRNA:   3'- guUGCUU---UGACGGCGGGUAUGGgaaa -5'
12793 5' -52.1 NC_003387.1 + 24552 0.69 0.637046
Target:  5'- gAGCGAAACUGUCGCCgGguucggGCUCa-- -3'
miRNA:   3'- gUUGCUUUGACGGCGGgUa-----UGGGaaa -5'
12793 5' -52.1 NC_003387.1 + 43585 0.69 0.65997
Target:  5'- aCGACGugGUUGCCGUCaGUGCCCUUg -3'
miRNA:   3'- -GUUGCuuUGACGGCGGgUAUGGGAAa -5'
12793 5' -52.1 NC_003387.1 + 7532 0.69 0.671396
Target:  5'- gAACGAGagcggcacuGCUGCCGCCCugGCCg--- -3'
miRNA:   3'- gUUGCUU---------UGACGGCGGGuaUGGgaaa -5'
12793 5' -52.1 NC_003387.1 + 23406 0.69 0.682782
Target:  5'- uCAGCGcgGcCUGgCGCUCGUGCCCg-- -3'
miRNA:   3'- -GUUGCuuU-GACgGCGGGUAUGGGaaa -5'
12793 5' -52.1 NC_003387.1 + 42353 0.68 0.727673
Target:  5'- -uGCGGgccAGCUuGCgGCCCAgGCCCUUa -3'
miRNA:   3'- guUGCU---UUGA-CGgCGGGUaUGGGAAa -5'
12793 5' -52.1 NC_003387.1 + 18960 0.68 0.727673
Target:  5'- aAACGcucGCggcGCCGCCguUGCCCUUg -3'
miRNA:   3'- gUUGCuu-UGa--CGGCGGguAUGGGAAa -5'
12793 5' -52.1 NC_003387.1 + 33083 0.68 0.727673
Target:  5'- aUAAUGucGCUgaucgaGCCGCCCGUcgcGCCCUUc -3'
miRNA:   3'- -GUUGCuuUGA------CGGCGGGUA---UGGGAAa -5'
12793 5' -52.1 NC_003387.1 + 25064 0.68 0.738668
Target:  5'- -uGCGAGauACUGCCGCcgCCGUugACCCa-- -3'
miRNA:   3'- guUGCUU--UGACGGCG--GGUA--UGGGaaa -5'
12793 5' -52.1 NC_003387.1 + 17031 0.68 0.738668
Target:  5'- gCGGCG--GCUGCCGCCCucGCCg--- -3'
miRNA:   3'- -GUUGCuuUGACGGCGGGuaUGGgaaa -5'
12793 5' -52.1 NC_003387.1 + 26292 0.68 0.738668
Target:  5'- aCGGCGuGAGCUGCuCGUcggucaCCAUGCCCa-- -3'
miRNA:   3'- -GUUGC-UUUGACG-GCG------GGUAUGGGaaa -5'
12793 5' -52.1 NC_003387.1 + 39154 0.67 0.748465
Target:  5'- cCGACGuc-CUGCCcgucgaucgggcuGCCCAgGCCCUUg -3'
miRNA:   3'- -GUUGCuuuGACGG-------------CGGGUaUGGGAAa -5'
12793 5' -52.1 NC_003387.1 + 39427 0.67 0.760297
Target:  5'- --uCGAGGCcGCCGCCCuUGCCg--- -3'
miRNA:   3'- guuGCUUUGaCGGCGGGuAUGGgaaa -5'
12793 5' -52.1 NC_003387.1 + 11791 0.67 0.770904
Target:  5'- uGGCGAccAGCUcGCCGUCCAUcaggccaccGCCCg-- -3'
miRNA:   3'- gUUGCU--UUGA-CGGCGGGUA---------UGGGaaa -5'
12793 5' -52.1 NC_003387.1 + 52100 0.67 0.770904
Target:  5'- gCGGCGAcGCUGCCcucGCCC-UGCUCg-- -3'
miRNA:   3'- -GUUGCUuUGACGG---CGGGuAUGGGaaa -5'
12793 5' -52.1 NC_003387.1 + 13953 0.67 0.775104
Target:  5'- aCAGCGuguGAUUGCCGCCCcgcggGcaaucucgaaccgcaUGCCCUUc -3'
miRNA:   3'- -GUUGCu--UUGACGGCGGG-----U---------------AUGGGAAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.