Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12793 | 5' | -52.1 | NC_003387.1 | + | 42353 | 0.68 | 0.727673 |
Target: 5'- -uGCGGgccAGCUuGCgGCCCAgGCCCUUa -3' miRNA: 3'- guUGCU---UUGA-CGgCGGGUaUGGGAAa -5' |
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12793 | 5' | -52.1 | NC_003387.1 | + | 18960 | 0.68 | 0.727673 |
Target: 5'- aAACGcucGCggcGCCGCCguUGCCCUUg -3' miRNA: 3'- gUUGCuu-UGa--CGGCGGguAUGGGAAa -5' |
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12793 | 5' | -52.1 | NC_003387.1 | + | 33083 | 0.68 | 0.727673 |
Target: 5'- aUAAUGucGCUgaucgaGCCGCCCGUcgcGCCCUUc -3' miRNA: 3'- -GUUGCuuUGA------CGGCGGGUA---UGGGAAa -5' |
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12793 | 5' | -52.1 | NC_003387.1 | + | 23406 | 0.69 | 0.682782 |
Target: 5'- uCAGCGcgGcCUGgCGCUCGUGCCCg-- -3' miRNA: 3'- -GUUGCuuU-GACgGCGGGUAUGGGaaa -5' |
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12793 | 5' | -52.1 | NC_003387.1 | + | 7532 | 0.69 | 0.671396 |
Target: 5'- gAACGAGagcggcacuGCUGCCGCCCugGCCg--- -3' miRNA: 3'- gUUGCUU---------UGACGGCGGGuaUGGgaaa -5' |
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12793 | 5' | -52.1 | NC_003387.1 | + | 43585 | 0.69 | 0.65997 |
Target: 5'- aCGACGugGUUGCCGUCaGUGCCCUUg -3' miRNA: 3'- -GUUGCuuUGACGGCGGgUAUGGGAAa -5' |
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12793 | 5' | -52.1 | NC_003387.1 | + | 24552 | 0.69 | 0.637046 |
Target: 5'- gAGCGAAACUGUCGCCgGguucggGCUCa-- -3' miRNA: 3'- gUUGCUUUGACGGCGGgUa-----UGGGaaa -5' |
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12793 | 5' | -52.1 | NC_003387.1 | + | 40409 | 0.7 | 0.625571 |
Target: 5'- -cGCGAGgauGCUGUCGCUCGUGCCg--- -3' miRNA: 3'- guUGCUU---UGACGGCGGGUAUGGgaaa -5' |
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12793 | 5' | -52.1 | NC_003387.1 | + | 15349 | 0.71 | 0.512813 |
Target: 5'- aCAGCGggGCgccGCCGCCCgacagGUGCCg--- -3' miRNA: 3'- -GUUGCuuUGa--CGGCGGG-----UAUGGgaaa -5' |
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12793 | 5' | -52.1 | NC_003387.1 | + | 32975 | 0.71 | 0.512813 |
Target: 5'- cCGGCGAGGCcGCCGaCCUucGUACCCg-- -3' miRNA: 3'- -GUUGCUUUGaCGGC-GGG--UAUGGGaaa -5' |
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12793 | 5' | -52.1 | NC_003387.1 | + | 35157 | 0.73 | 0.428958 |
Target: 5'- cCAGCGggGCguUGUCGCCCuugucACCCUUc -3' miRNA: 3'- -GUUGCuuUG--ACGGCGGGua---UGGGAAa -5' |
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12793 | 5' | -52.1 | NC_003387.1 | + | 41720 | 1.06 | 0.002616 |
Target: 5'- cCAACGAAACUGCCGCCCAUACCCUUUg -3' miRNA: 3'- -GUUGCUUUGACGGCGGGUAUGGGAAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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