miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12795 3' -54.3 NC_003387.1 + 44373 0.67 0.664032
Target:  5'- -aUGCCGAacaGCGGCaCGucGGGGUCGu -3'
miRNA:   3'- caGCGGCUg--CGCCG-GCuuUUUCAGUu -5'
12795 3' -54.3 NC_003387.1 + 35561 0.67 0.657321
Target:  5'- -aCGCCGcgauggacuaccucgGCGCccuGGCCGAGcuGGUCGAc -3'
miRNA:   3'- caGCGGC---------------UGCG---CCGGCUUuuUCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 28462 0.67 0.641635
Target:  5'- --aGCUGGCgGCGGCCcccGAGGUCAAg -3'
miRNA:   3'- cagCGGCUG-CGCCGGcuuUUUCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 50979 0.68 0.630417
Target:  5'- --aGCCGAUaGCGGCCGggGgcGUUu- -3'
miRNA:   3'- cagCGGCUG-CGCCGGCuuUuuCAGuu -5'
12795 3' -54.3 NC_003387.1 + 13188 0.68 0.630417
Target:  5'- --gGCCGACGCGaUCGAGAAgcgcggcaaGGUCAAc -3'
miRNA:   3'- cagCGGCUGCGCcGGCUUUU---------UCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 31270 0.68 0.607998
Target:  5'- -gCGCCaGCGgGGCCGGGuuAGUUGAc -3'
miRNA:   3'- caGCGGcUGCgCCGGCUUuuUCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 27464 0.68 0.607998
Target:  5'- -aCGCgCGACGuCGGCCGGAuagccGGUCc- -3'
miRNA:   3'- caGCG-GCUGC-GCCGGCUUuu---UCAGuu -5'
12795 3' -54.3 NC_003387.1 + 39088 0.68 0.596815
Target:  5'- -cCGCCGACgGUGGCCGGGuuGAAcUCAc -3'
miRNA:   3'- caGCGGCUG-CGCCGGCUU--UUUcAGUu -5'
12795 3' -54.3 NC_003387.1 + 43245 0.68 0.585664
Target:  5'- -aCGCCGuacuCGgGGUCGAAAucGUCGg -3'
miRNA:   3'- caGCGGCu---GCgCCGGCUUUuuCAGUu -5'
12795 3' -54.3 NC_003387.1 + 48525 0.69 0.574553
Target:  5'- --gGCCGACacgcgGUGGCCGAAgcaccgcgccGAGGUCAc -3'
miRNA:   3'- cagCGGCUG-----CGCCGGCUU----------UUUCAGUu -5'
12795 3' -54.3 NC_003387.1 + 2249 0.69 0.563492
Target:  5'- aGUUGCCGACGaccucgcgGGCCGG---GGUCGg -3'
miRNA:   3'- -CAGCGGCUGCg-------CCGGCUuuuUCAGUu -5'
12795 3' -54.3 NC_003387.1 + 33476 0.69 0.552488
Target:  5'- aGUCGCCGAgGCGGUCGGcgcccgCGAu -3'
miRNA:   3'- -CAGCGGCUgCGCCGGCUuuuucaGUU- -5'
12795 3' -54.3 NC_003387.1 + 34528 0.69 0.552488
Target:  5'- cGUCGCCGAgGCGcaccucgcaGCCGAucgucagcGGGUCGAc -3'
miRNA:   3'- -CAGCGGCUgCGC---------CGGCUuu------UUCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 1815 0.69 0.541549
Target:  5'- -cUGaCCGGCGCGGCCGAuauGG-CGAa -3'
miRNA:   3'- caGC-GGCUGCGCCGGCUuuuUCaGUU- -5'
12795 3' -54.3 NC_003387.1 + 28781 0.69 0.519899
Target:  5'- uGUCGCCGugccCGCGGUCGAGccAGcCGGg -3'
miRNA:   3'- -CAGCGGCu---GCGCCGGCUUuuUCaGUU- -5'
12795 3' -54.3 NC_003387.1 + 46354 0.7 0.509201
Target:  5'- cGUCGCC--CGCGGCCGAGGccAAGcgCGAc -3'
miRNA:   3'- -CAGCGGcuGCGCCGGCUUU--UUCa-GUU- -5'
12795 3' -54.3 NC_003387.1 + 6666 0.7 0.498596
Target:  5'- -aCGCCGACGCGG-CGAucGAGGUgAu -3'
miRNA:   3'- caGCGGCUGCGCCgGCUu-UUUCAgUu -5'
12795 3' -54.3 NC_003387.1 + 17245 0.71 0.437247
Target:  5'- -aCGCCGugGCGuGUCGAAAc-GUCGAu -3'
miRNA:   3'- caGCGGCugCGC-CGGCUUUuuCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 36119 0.71 0.437247
Target:  5'- --aGUCGACGCGGuUCGAGGucGUCGAg -3'
miRNA:   3'- cagCGGCUGCGCC-GGCUUUuuCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 20835 0.71 0.437247
Target:  5'- cGUCGCgCGACGuCGGCgaCGGGAuAGGUCAGc -3'
miRNA:   3'- -CAGCG-GCUGC-GCCG--GCUUU-UUCAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.