miRNA display CGI


Results 21 - 40 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12795 5' -63.3 NC_003387.1 + 51300 0.66 0.332235
Target:  5'- cUGCCa--GCuCGUCGGCggCgGCGCCUcGCa -3'
miRNA:   3'- -ACGGcagCG-GCAGCCG--GgUGCGGA-CG- -5'
12795 5' -63.3 NC_003387.1 + 22518 0.66 0.332235
Target:  5'- aUGCC--CGCCGcgacccUGGCCCAgGCCgaggGCu -3'
miRNA:   3'- -ACGGcaGCGGCa-----GCCGGGUgCGGa---CG- -5'
12795 5' -63.3 NC_003387.1 + 23305 0.66 0.332235
Target:  5'- gGCCGcUGCgG-CGGCCUccuccuGCGCCcgGCg -3'
miRNA:   3'- aCGGCaGCGgCaGCCGGG------UGCGGa-CG- -5'
12795 5' -63.3 NC_003387.1 + 22118 0.66 0.332235
Target:  5'- uUGCCGUgCGUCGUgaugUGGCCgACGUacccGCa -3'
miRNA:   3'- -ACGGCA-GCGGCA----GCCGGgUGCGga--CG- -5'
12795 5' -63.3 NC_003387.1 + 4237 0.66 0.332235
Target:  5'- -aUCGUUG-CGUCGGCgCCgcacaACGUCUGCg -3'
miRNA:   3'- acGGCAGCgGCAGCCG-GG-----UGCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 37654 0.66 0.332235
Target:  5'- aG-CGUCGCCGUCacgaCCACGCCauccgguaauacUGCg -3'
miRNA:   3'- aCgGCAGCGGCAGccg-GGUGCGG------------ACG- -5'
12795 5' -63.3 NC_003387.1 + 34963 0.66 0.332235
Target:  5'- gGCCGaCGCCGUgaugagcggugUGGCCCcugGCgGCCcgGCc -3'
miRNA:   3'- aCGGCaGCGGCA-----------GCCGGG---UG-CGGa-CG- -5'
12795 5' -63.3 NC_003387.1 + 3884 0.66 0.324652
Target:  5'- gUGCCGgaaccggCGCCG-CuGCCCGacccugacCGCCUGg -3'
miRNA:   3'- -ACGGCa------GCGGCaGcCGGGU--------GCGGACg -5'
12795 5' -63.3 NC_003387.1 + 36733 0.66 0.324652
Target:  5'- gGCCucgaCGCCGUCuGCgaGCGCCUGg -3'
miRNA:   3'- aCGGca--GCGGCAGcCGggUGCGGACg -5'
12795 5' -63.3 NC_003387.1 + 15175 0.66 0.324652
Target:  5'- cGCCGcgaggugaUCGaCGaggaGGCCCGCGCCcgGCc -3'
miRNA:   3'- aCGGC--------AGCgGCag--CCGGGUGCGGa-CG- -5'
12795 5' -63.3 NC_003387.1 + 30659 0.66 0.324652
Target:  5'- cGCCGUCGCCaaCGGUgCCGgugauCGCC-GCc -3'
miRNA:   3'- aCGGCAGCGGcaGCCG-GGU-----GCGGaCG- -5'
12795 5' -63.3 NC_003387.1 + 50093 0.66 0.324652
Target:  5'- aGCaCGacacgaUCGCCGa-GGCCCgcgaGCGCCUGg -3'
miRNA:   3'- aCG-GC------AGCGGCagCCGGG----UGCGGACg -5'
12795 5' -63.3 NC_003387.1 + 21553 0.66 0.324652
Target:  5'- cGCCcgcGUCGUCGUgcagaccgUGGCCCAgGCgCgcgGCa -3'
miRNA:   3'- aCGG---CAGCGGCA--------GCCGGGUgCG-Ga--CG- -5'
12795 5' -63.3 NC_003387.1 + 28784 0.66 0.324652
Target:  5'- cGCCGUgccCGCgGUCGaGCCa--GCCggGCa -3'
miRNA:   3'- aCGGCA---GCGgCAGC-CGGgugCGGa-CG- -5'
12795 5' -63.3 NC_003387.1 + 30032 0.66 0.323901
Target:  5'- gGCCGccagcgcCGCCGUCGacaccGCCCACGagcgcgcCCUGa -3'
miRNA:   3'- aCGGCa------GCGGCAGC-----CGGGUGC-------GGACg -5'
12795 5' -63.3 NC_003387.1 + 50248 0.66 0.323901
Target:  5'- cGCCGUacgucagCGCCGggCGGUgCACcucgGCCUGg -3'
miRNA:   3'- aCGGCA-------GCGGCa-GCCGgGUG----CGGACg -5'
12795 5' -63.3 NC_003387.1 + 48239 0.66 0.317198
Target:  5'- gUGUCG-CGCCcgGUCGGCCgCG-GCCaGCa -3'
miRNA:   3'- -ACGGCaGCGG--CAGCCGG-GUgCGGaCG- -5'
12795 5' -63.3 NC_003387.1 + 735 0.66 0.317198
Target:  5'- gGCC-UgGCCGUCGGUgCGCGCgacgUGUg -3'
miRNA:   3'- aCGGcAgCGGCAGCCGgGUGCGg---ACG- -5'
12795 5' -63.3 NC_003387.1 + 23095 0.66 0.317198
Target:  5'- cGCCGUCGCgCGUgCGGUgCACcgaCUGa -3'
miRNA:   3'- aCGGCAGCG-GCA-GCCGgGUGcg-GACg -5'
12795 5' -63.3 NC_003387.1 + 44395 0.66 0.317198
Target:  5'- gGUCGUCGagGUCGGCCgggccguagugaUGCGCC-GCg -3'
miRNA:   3'- aCGGCAGCggCAGCCGG------------GUGCGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.