miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12796 3' -56.5 NC_003387.1 + 2066 0.66 0.628184
Target:  5'- -aGAAUGGU--CUGCGCGacGCGGUCcucgGCg -3'
miRNA:   3'- aaCUUAUCGguGACGCGC--CGCCAG----CG- -5'
12796 3' -56.5 NC_003387.1 + 27528 0.66 0.617098
Target:  5'- aUGAugcGCUGCcGCgGCGGCGG-CGCc -3'
miRNA:   3'- aACUuauCGGUGaCG-CGCCGCCaGCG- -5'
12796 3' -56.5 NC_003387.1 + 30555 0.66 0.617098
Target:  5'- aUGGAccGCCGC--CGCGGCcGGUaCGCg -3'
miRNA:   3'- aACUUauCGGUGacGCGCCG-CCA-GCG- -5'
12796 3' -56.5 NC_003387.1 + 45716 0.66 0.61599
Target:  5'- -cGGccgAGCUGCUGCGCGacauucuGCGG-CGCc -3'
miRNA:   3'- aaCUua-UCGGUGACGCGC-------CGCCaGCG- -5'
12796 3' -56.5 NC_003387.1 + 11826 0.66 0.606026
Target:  5'- -----gAGCCGCgauCGCGGCcuugauuaGGUCGCc -3'
miRNA:   3'- aacuuaUCGGUGac-GCGCCG--------CCAGCG- -5'
12796 3' -56.5 NC_003387.1 + 37839 0.66 0.606026
Target:  5'- -cGAGgucgGGCacccCUGCGCccGGCGGcUCGCc -3'
miRNA:   3'- aaCUUa---UCGgu--GACGCG--CCGCC-AGCG- -5'
12796 3' -56.5 NC_003387.1 + 2051 0.66 0.594976
Target:  5'- -cGAGcUGGCCGCg--GUGGCGG-CGCc -3'
miRNA:   3'- aaCUU-AUCGGUGacgCGCCGCCaGCG- -5'
12796 3' -56.5 NC_003387.1 + 9734 0.66 0.583958
Target:  5'- ------cGCagguCUGCGCGGCGGUaagGCa -3'
miRNA:   3'- aacuuauCGgu--GACGCGCCGCCAg--CG- -5'
12796 3' -56.5 NC_003387.1 + 51847 0.66 0.583958
Target:  5'- cUGAccGgcGUCGCUGcCGCGGUGGccccggugaUCGCg -3'
miRNA:   3'- aACU--UauCGGUGAC-GCGCCGCC---------AGCG- -5'
12796 3' -56.5 NC_003387.1 + 51685 0.66 0.583958
Target:  5'- -----cGGCCcuuGCUGCGUGGCuGGUgaccCGCa -3'
miRNA:   3'- aacuuaUCGG---UGACGCGCCG-CCA----GCG- -5'
12796 3' -56.5 NC_003387.1 + 4585 0.66 0.583958
Target:  5'- --cGGUGGCgCGCUGCGCGcG-GGUCuGCc -3'
miRNA:   3'- aacUUAUCG-GUGACGCGC-CgCCAG-CG- -5'
12796 3' -56.5 NC_003387.1 + 28918 0.66 0.572981
Target:  5'- ---cGUAuCUGCUGCGCGGCGG-CGa -3'
miRNA:   3'- aacuUAUcGGUGACGCGCCGCCaGCg -5'
12796 3' -56.5 NC_003387.1 + 19917 0.66 0.572981
Target:  5'- cUGAGauuGCUugaGCUGCGCcaggucgacccGGCGGUaCGCg -3'
miRNA:   3'- aACUUau-CGG---UGACGCG-----------CCGCCA-GCG- -5'
12796 3' -56.5 NC_003387.1 + 41151 0.67 0.562053
Target:  5'- -----cGGCCGCUGCGagugucaGGgcgagugcggcCGGUCGCa -3'
miRNA:   3'- aacuuaUCGGUGACGCg------CC-----------GCCAGCG- -5'
12796 3' -56.5 NC_003387.1 + 3926 0.67 0.540377
Target:  5'- --cGAUGGCCGCcGcCGCGGCGaUCaGCg -3'
miRNA:   3'- aacUUAUCGGUGaC-GCGCCGCcAG-CG- -5'
12796 3' -56.5 NC_003387.1 + 49397 0.67 0.540377
Target:  5'- ------cGCaCGCUGCGCaGGCGGaUGCg -3'
miRNA:   3'- aacuuauCG-GUGACGCG-CCGCCaGCG- -5'
12796 3' -56.5 NC_003387.1 + 40491 0.67 0.540377
Target:  5'- -cGAGc-GCCGCUGCGCuGGCGacCGCc -3'
miRNA:   3'- aaCUUauCGGUGACGCG-CCGCcaGCG- -5'
12796 3' -56.5 NC_003387.1 + 19272 0.67 0.529643
Target:  5'- -----cGGCCGCcuUGCGCgaGGUGGUgGCg -3'
miRNA:   3'- aacuuaUCGGUG--ACGCG--CCGCCAgCG- -5'
12796 3' -56.5 NC_003387.1 + 2526 0.67 0.529643
Target:  5'- aUGAggGGCCGgUGUuccGCacGCGGUCGCc -3'
miRNA:   3'- aACUuaUCGGUgACG---CGc-CGCCAGCG- -5'
12796 3' -56.5 NC_003387.1 + 42041 0.67 0.518989
Target:  5'- -----cGGCCACcGCcgagGCGGCcguGGUCGCa -3'
miRNA:   3'- aacuuaUCGGUGaCG----CGCCG---CCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.