miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12796 5' -58.6 NC_003387.1 + 21932 0.66 0.531304
Target:  5'- gUGGUGCUCGGCgGCgggggcgGCGGCaggCGUCuGCGg -3'
miRNA:   3'- -ACUACGGGCUGgUG-------UGCCG---GUAG-CGC- -5'
12796 5' -58.6 NC_003387.1 + 51229 0.66 0.531304
Target:  5'- cUGGUGCacgCUGACC-UugGGCCAuaugcccaucgccUCGCGc -3'
miRNA:   3'- -ACUACG---GGCUGGuGugCCGGU-------------AGCGC- -5'
12796 5' -58.6 NC_003387.1 + 12008 0.66 0.521966
Target:  5'- cGcgGCCUGGuCgACACGGCgCAU-GCGg -3'
miRNA:   3'- aCuaCGGGCU-GgUGUGCCG-GUAgCGC- -5'
12796 5' -58.6 NC_003387.1 + 37607 0.66 0.521966
Target:  5'- aUGGUGCacCCGcACCGCACuGCCGagguaaUCGCc -3'
miRNA:   3'- -ACUACG--GGC-UGGUGUGcCGGU------AGCGc -5'
12796 5' -58.6 NC_003387.1 + 51124 0.66 0.521966
Target:  5'- ---cGCCCGGCCgaACAUG-CCAgggCGCGu -3'
miRNA:   3'- acuaCGGGCUGG--UGUGCcGGUa--GCGC- -5'
12796 5' -58.6 NC_003387.1 + 36638 0.66 0.521966
Target:  5'- cGAUGCCCGACgGCGCccccgaguGGCaucaccggcUCGCc -3'
miRNA:   3'- aCUACGGGCUGgUGUG--------CCGgu-------AGCGc -5'
12796 5' -58.6 NC_003387.1 + 750 0.66 0.521966
Target:  5'- gGAUGCggUCGGCCAcCGCGGCa---GCGa -3'
miRNA:   3'- aCUACG--GGCUGGU-GUGCCGguagCGC- -5'
12796 5' -58.6 NC_003387.1 + 42509 0.66 0.521966
Target:  5'- gGAUGCCCGACUcaagcuCGCGaGUC-UCGgGg -3'
miRNA:   3'- aCUACGGGCUGGu-----GUGC-CGGuAGCgC- -5'
12796 5' -58.6 NC_003387.1 + 48434 0.66 0.521966
Target:  5'- cGGUGCgCUGcucGCC-CGCGGCCuccAUCGCc -3'
miRNA:   3'- aCUACG-GGC---UGGuGUGCCGG---UAGCGc -5'
12796 5' -58.6 NC_003387.1 + 26276 0.66 0.521966
Target:  5'- -cGUGCUCGACCGCAa---CGUCGCa -3'
miRNA:   3'- acUACGGGCUGGUGUgccgGUAGCGc -5'
12796 5' -58.6 NC_003387.1 + 47868 0.66 0.520933
Target:  5'- aGAacUGCUCGGCCGCcaucucgGCGuGCaCGUCGCc -3'
miRNA:   3'- aCU--ACGGGCUGGUG-------UGC-CG-GUAGCGc -5'
12796 5' -58.6 NC_003387.1 + 42293 0.66 0.511667
Target:  5'- cGAUGCCCG-CCGacagcCGCGaGCCGUacUGCu -3'
miRNA:   3'- aCUACGGGCuGGU-----GUGC-CGGUA--GCGc -5'
12796 5' -58.6 NC_003387.1 + 42023 0.66 0.511667
Target:  5'- ---cGCCCGGCUugauACcgGCGGCCAcCGCc -3'
miRNA:   3'- acuaCGGGCUGG----UG--UGCCGGUaGCGc -5'
12796 5' -58.6 NC_003387.1 + 47031 0.66 0.511666
Target:  5'- gGcgGCCCGGCCggGCAUGaGgCGUgGCGc -3'
miRNA:   3'- aCuaCGGGCUGG--UGUGC-CgGUAgCGC- -5'
12796 5' -58.6 NC_003387.1 + 32769 0.66 0.511666
Target:  5'- cGAUGCgCaACCACcCGGCCG-CGUa -3'
miRNA:   3'- aCUACGgGcUGGUGuGCCGGUaGCGc -5'
12796 5' -58.6 NC_003387.1 + 46740 0.66 0.511666
Target:  5'- cGAUGCaCGGCgGCAaccUGGCCGggucgagcgacUCGCGg -3'
miRNA:   3'- aCUACGgGCUGgUGU---GCCGGU-----------AGCGC- -5'
12796 5' -58.6 NC_003387.1 + 30543 0.66 0.510641
Target:  5'- gGgcGCCCcgacaugGACCGCcgccGCGGCCGguaCGCGc -3'
miRNA:   3'- aCuaCGGG-------CUGGUG----UGCCGGUa--GCGC- -5'
12796 5' -58.6 NC_003387.1 + 15773 0.66 0.510641
Target:  5'- cGGUGUUCGACCAguCGcGCUuuagcgugaucauGUCGCGc -3'
miRNA:   3'- aCUACGGGCUGGUguGC-CGG-------------UAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 51051 0.66 0.508593
Target:  5'- cGGUGUcgguaCCGGcCCACaccuccucgacgugGCGGCCGUCGUc -3'
miRNA:   3'- aCUACG-----GGCU-GGUG--------------UGCCGGUAGCGc -5'
12796 5' -58.6 NC_003387.1 + 28540 0.66 0.505527
Target:  5'- ---aGCCCGGCgACaauugggcgaccgagGCGGCgAUCGCc -3'
miRNA:   3'- acuaCGGGCUGgUG---------------UGCCGgUAGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.