miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12797 3' -54.4 NC_003387.1 + 22181 0.66 0.749785
Target:  5'- cGGcGGUCc--AUGUCgGGGCGCCCGu -3'
miRNA:   3'- aCCcCUAGuauUACAG-CUCGCGGGCc -5'
12797 3' -54.4 NC_003387.1 + 42077 0.67 0.728764
Target:  5'- cUGGcGcgCGUGcUG-CGGGUGCCCGGc -3'
miRNA:   3'- -ACCcCuaGUAUuACaGCUCGCGGGCC- -5'
12797 3' -54.4 NC_003387.1 + 34949 0.67 0.722378
Target:  5'- aUGGGGAUCGUuucggccgacgccguGAUGagCGguguggccccuGGCGgCCCGGc -3'
miRNA:   3'- -ACCCCUAGUA---------------UUACa-GC-----------UCGC-GGGCC- -5'
12797 3' -54.4 NC_003387.1 + 38802 0.67 0.696533
Target:  5'- cGGcGGcGUCAUGGUGccgaUCGGGCGCCa-- -3'
miRNA:   3'- aCC-CC-UAGUAUUAC----AGCUCGCGGgcc -5'
12797 3' -54.4 NC_003387.1 + 42010 0.68 0.641705
Target:  5'- gUGGGGccgccuggcCGUGAUGgucgcCGAGCGCCaGGg -3'
miRNA:   3'- -ACCCCua-------GUAUUACa----GCUCGCGGgCC- -5'
12797 3' -54.4 NC_003387.1 + 30245 0.68 0.630671
Target:  5'- uUGGccGGGUCGUcgggGUCG-GCGCCgGGg -3'
miRNA:   3'- -ACC--CCUAGUAuua-CAGCuCGCGGgCC- -5'
12797 3' -54.4 NC_003387.1 + 1218 0.68 0.629568
Target:  5'- cGGGG--CAUGGcucGUCGAGCugcuccuGCCCGGu -3'
miRNA:   3'- aCCCCuaGUAUUa--CAGCUCG-------CGGGCC- -5'
12797 3' -54.4 NC_003387.1 + 27941 0.69 0.586645
Target:  5'- gGGGGggCucg--GUCgGGGCGCUCGGc -3'
miRNA:   3'- aCCCCuaGuauuaCAG-CUCGCGGGCC- -5'
12797 3' -54.4 NC_003387.1 + 12914 0.7 0.543224
Target:  5'- gUGGGGGUgccuaGUGGUGgcUCGucGGCGCUCGGc -3'
miRNA:   3'- -ACCCCUAg----UAUUAC--AGC--UCGCGGGCC- -5'
12797 3' -54.4 NC_003387.1 + 23913 0.7 0.521901
Target:  5'- aGGGGcUgAacGUcGUCGAGCuGCCCGGc -3'
miRNA:   3'- aCCCCuAgUauUA-CAGCUCG-CGGGCC- -5'
12797 3' -54.4 NC_003387.1 + 10239 0.7 0.505079
Target:  5'- uUGGGGAUCucccacggCGGGauCGCCCGGu -3'
miRNA:   3'- -ACCCCUAGuauuaca-GCUC--GCGGGCC- -5'
12797 3' -54.4 NC_003387.1 + 22964 0.71 0.459114
Target:  5'- gUGGGGcgccccgGUCAUcGUGUCGGGCgGCgCCGa -3'
miRNA:   3'- -ACCCC-------UAGUAuUACAGCUCG-CG-GGCc -5'
12797 3' -54.4 NC_003387.1 + 18474 0.75 0.301785
Target:  5'- cGGcGAUCAgccgGUCGAGCGCCCcgaGGg -3'
miRNA:   3'- aCCcCUAGUauuaCAGCUCGCGGG---CC- -5'
12797 3' -54.4 NC_003387.1 + 40110 1.1 0.001099
Target:  5'- uUGGGGAUCAUAAUGUCGAGCGCCCGGc -3'
miRNA:   3'- -ACCCCUAGUAUUACAGCUCGCGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.