Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12797 | 5' | -58.9 | NC_003387.1 | + | 40147 | 1.1 | 0.000352 |
Target: 5'- gAUCGGGGUAAGCGUCCUGCGACCGCCa -3' miRNA: 3'- -UAGCCCCAUUCGCAGGACGCUGGCGG- -5' |
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12797 | 5' | -58.9 | NC_003387.1 | + | 16558 | 0.77 | 0.098403 |
Target: 5'- gAUCGGGGcggUGAGCaUCCgGcCGACCGCCu -3' miRNA: 3'- -UAGCCCC---AUUCGcAGGaC-GCUGGCGG- -5' |
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12797 | 5' | -58.9 | NC_003387.1 | + | 6942 | 0.77 | 0.106945 |
Target: 5'- uAUCGGGGU--GCGUgagggcacCCUGCuGGCCGCCc -3' miRNA: 3'- -UAGCCCCAuuCGCA--------GGACG-CUGGCGG- -5' |
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12797 | 5' | -58.9 | NC_003387.1 | + | 43134 | 0.75 | 0.14069 |
Target: 5'- -gCGGuGGUGGGCGuUCCUGC-ACCGCa -3' miRNA: 3'- uaGCC-CCAUUCGC-AGGACGcUGGCGg -5' |
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12797 | 5' | -58.9 | NC_003387.1 | + | 44874 | 0.74 | 0.173051 |
Target: 5'- cGUCGGGGgcgucGGCGauuccgCCUGCGcgccgggcaccucgGCCGCCa -3' miRNA: 3'- -UAGCCCCau---UCGCa-----GGACGC--------------UGGCGG- -5' |
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12797 | 5' | -58.9 | NC_003387.1 | + | 51372 | 0.72 | 0.209699 |
Target: 5'- cGUCGGGGUcGGCGUCCU-CGuCgGCg -3' miRNA: 3'- -UAGCCCCAuUCGCAGGAcGCuGgCGg -5' |
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12797 | 5' | -58.9 | NC_003387.1 | + | 31013 | 0.72 | 0.226609 |
Target: 5'- gAUCGGGccGAGCGUgcgCCgggGCGGCgGCCa -3' miRNA: 3'- -UAGCCCcaUUCGCA---GGa--CGCUGgCGG- -5' |
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12797 | 5' | -58.9 | NC_003387.1 | + | 51400 | 0.71 | 0.237906 |
Target: 5'- uUCGGccGGUgaccggcGAGCG-CCUGCGgcGCCGCCu -3' miRNA: 3'- uAGCC--CCA-------UUCGCaGGACGC--UGGCGG- -5' |
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12797 | 5' | -58.9 | NC_003387.1 | + | 3183 | 0.71 | 0.270566 |
Target: 5'- aAUCGGGGUGAGCcugcUCgggCUGCGACguccaGCCc -3' miRNA: 3'- -UAGCCCCAUUCGc---AG---GACGCUGg----CGG- -5' |
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12797 | 5' | -58.9 | NC_003387.1 | + | 36132 | 0.7 | 0.291412 |
Target: 5'- aAUCGuaGUaAAGCGUCCcgGCGuuGCCGCCg -3' miRNA: 3'- -UAGCccCA-UUCGCAGGa-CGC--UGGCGG- -5' |
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12797 | 5' | -58.9 | NC_003387.1 | + | 15545 | 0.7 | 0.294285 |
Target: 5'- cUCGGGGUGccgggccgccagcucGGUGaCCaUGCGcCCGCCc -3' miRNA: 3'- uAGCCCCAU---------------UCGCaGG-ACGCuGGCGG- -5' |
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12797 | 5' | -58.9 | NC_003387.1 | + | 43349 | 0.68 | 0.387172 |
Target: 5'- cUCGGGGgu--CG-CCU-CGGCCGCCa -3' miRNA: 3'- uAGCCCCauucGCaGGAcGCUGGCGG- -5' |
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12797 | 5' | -58.9 | NC_003387.1 | + | 25032 | 0.68 | 0.39425 |
Target: 5'- uGUCGGGGUcGGCGcagCacucgcgccagagCUGCGagauacuGCCGCCg -3' miRNA: 3'- -UAGCCCCAuUCGCa--G-------------GACGC-------UGGCGG- -5' |
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12797 | 5' | -58.9 | NC_003387.1 | + | 5671 | 0.68 | 0.41414 |
Target: 5'- cUCGGGGUaaaacGAGCGccacgCCUcaugcccgGCcgGGCCGCCa -3' miRNA: 3'- uAGCCCCA-----UUCGCa----GGA--------CG--CUGGCGG- -5' |
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12797 | 5' | -58.9 | NC_003387.1 | + | 1394 | 0.68 | 0.41414 |
Target: 5'- gGUCGGGGUcgcGCucgaaGUUgUGCGaggcGCCGCCg -3' miRNA: 3'- -UAGCCCCAuu-CG-----CAGgACGC----UGGCGG- -5' |
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12797 | 5' | -58.9 | NC_003387.1 | + | 21945 | 0.67 | 0.423382 |
Target: 5'- -gCGGGGgcGGCGgcaggcgUCUGCGG-CGCUg -3' miRNA: 3'- uaGCCCCauUCGCa------GGACGCUgGCGG- -5' |
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12797 | 5' | -58.9 | NC_003387.1 | + | 49448 | 0.67 | 0.423383 |
Target: 5'- uGUCGGGGUcguCGUCCauuuCGGCgGCCa -3' miRNA: 3'- -UAGCCCCAuucGCAGGac--GCUGgCGG- -5' |
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12797 | 5' | -58.9 | NC_003387.1 | + | 37842 | 0.67 | 0.461547 |
Target: 5'- gGUCGGGcaccccuGCGcCCgGCGGCuCGCCu -3' miRNA: 3'- -UAGCCCcauu---CGCaGGaCGCUG-GCGG- -5' |
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12797 | 5' | -58.9 | NC_003387.1 | + | 24137 | 0.67 | 0.461548 |
Target: 5'- -gCGGcGGUGuugagcuugagGGCGUCgucgacgGCGAUCGCCg -3' miRNA: 3'- uaGCC-CCAU-----------UCGCAGga-----CGCUGGCGG- -5' |
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12797 | 5' | -58.9 | NC_003387.1 | + | 51178 | 0.67 | 0.470384 |
Target: 5'- cUCGGGGccgAGGUcgaacagGUCgUGCcACCGCCc -3' miRNA: 3'- uAGCCCCa--UUCG-------CAGgACGcUGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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