miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12798 3' -55 NC_003387.1 + 49186 0.66 0.699986
Target:  5'- uGAGCAGCcGCCUGgggCGGcGGCgGggGCa -3'
miRNA:   3'- -CUUGUCGcUGGGCa--GCU-CCGgUuaCG- -5'
12798 3' -55 NC_003387.1 + 38091 0.66 0.689089
Target:  5'- -cGCGGCGGCCUGaCG-GGCaccUGCg -3'
miRNA:   3'- cuUGUCGCUGGGCaGCuCCGguuACG- -5'
12798 3' -55 NC_003387.1 + 29563 0.66 0.689089
Target:  5'- cGAGguGUGgguGCUCGacuUCGAGGCCGAgggGCc -3'
miRNA:   3'- -CUUguCGC---UGGGC---AGCUCCGGUUa--CG- -5'
12798 3' -55 NC_003387.1 + 18043 0.66 0.689089
Target:  5'- -cACGGCGugUuuuuCGUCG-GGCUcGUGCa -3'
miRNA:   3'- cuUGUCGCugG----GCAGCuCCGGuUACG- -5'
12798 3' -55 NC_003387.1 + 14050 0.66 0.689089
Target:  5'- cGACAcCG--CCGUCGAGGuaCCAGUGCg -3'
miRNA:   3'- cUUGUcGCugGGCAGCUCC--GGUUACG- -5'
12798 3' -55 NC_003387.1 + 42329 0.66 0.689089
Target:  5'- cGAGCGcCGAaCCGUCGccgagguugcGGGCCAGcuUGCg -3'
miRNA:   3'- -CUUGUcGCUgGGCAGC----------UCCGGUU--ACG- -5'
12798 3' -55 NC_003387.1 + 11275 0.66 0.689089
Target:  5'- --uCGGCGACUCGaUCaAGGCUcuUGCg -3'
miRNA:   3'- cuuGUCGCUGGGC-AGcUCCGGuuACG- -5'
12798 3' -55 NC_003387.1 + 42151 0.66 0.687996
Target:  5'- cGGCGGUGGCCCGcugucgaUCGAGGagcugaCCGA-GCg -3'
miRNA:   3'- cUUGUCGCUGGGC-------AGCUCC------GGUUaCG- -5'
12798 3' -55 NC_003387.1 + 23608 0.67 0.678137
Target:  5'- uAACGGCGAgCUGUggUGGGGCaCAAcgGCa -3'
miRNA:   3'- cUUGUCGCUgGGCA--GCUCCG-GUUa-CG- -5'
12798 3' -55 NC_003387.1 + 37617 0.67 0.678137
Target:  5'- ---aGGCGcCCCGUUGAcGCCGAUccGCg -3'
miRNA:   3'- cuugUCGCuGGGCAGCUcCGGUUA--CG- -5'
12798 3' -55 NC_003387.1 + 8065 0.67 0.678137
Target:  5'- cGGCAGCcccucGGCCaggauCGcCGAGGCCGcgGCc -3'
miRNA:   3'- cUUGUCG-----CUGG-----GCaGCUCCGGUuaCG- -5'
12798 3' -55 NC_003387.1 + 44021 0.67 0.678137
Target:  5'- ---gAGCGGCUCGUCGAcGUCGGUcgGCa -3'
miRNA:   3'- cuugUCGCUGGGCAGCUcCGGUUA--CG- -5'
12798 3' -55 NC_003387.1 + 29432 0.67 0.678137
Target:  5'- -cGCAGCGGCCCG-CGcGGUCGc--- -3'
miRNA:   3'- cuUGUCGCUGGGCaGCuCCGGUuacg -5'
12798 3' -55 NC_003387.1 + 11668 0.67 0.667141
Target:  5'- cGACAGCGGCCuCGgcgaucgcgUGGGuGUCAAUGUc -3'
miRNA:   3'- cUUGUCGCUGG-GCa--------GCUC-CGGUUACG- -5'
12798 3' -55 NC_003387.1 + 45098 0.67 0.667141
Target:  5'- --uCGGCGGCCagguCGUCGAcGCCGcgGUg -3'
miRNA:   3'- cuuGUCGCUGG----GCAGCUcCGGUuaCG- -5'
12798 3' -55 NC_003387.1 + 470 0.67 0.667141
Target:  5'- cGACGGCGACCgGcgCGAGcuGCUcgucgcGAUGCg -3'
miRNA:   3'- cUUGUCGCUGGgCa-GCUC--CGG------UUACG- -5'
12798 3' -55 NC_003387.1 + 25419 0.67 0.667141
Target:  5'- -cACGGCGACgCGgcucucaaGGGccGCCAGUGCg -3'
miRNA:   3'- cuUGUCGCUGgGCag------CUC--CGGUUACG- -5'
12798 3' -55 NC_003387.1 + 15995 0.67 0.656111
Target:  5'- -cGCAGaCGGC--GUCGAGGCCGG-GCa -3'
miRNA:   3'- cuUGUC-GCUGggCAGCUCCGGUUaCG- -5'
12798 3' -55 NC_003387.1 + 19981 0.67 0.656111
Target:  5'- uGACAGCccGAaUCGcCGAGGCCAccGCg -3'
miRNA:   3'- cUUGUCG--CUgGGCaGCUCCGGUuaCG- -5'
12798 3' -55 NC_003387.1 + 12711 0.67 0.656111
Target:  5'- -cGCgAGCG-CCCG-CGGGGCUcuaGGUGCc -3'
miRNA:   3'- cuUG-UCGCuGGGCaGCUCCGG---UUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.