miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12798 5' -53.9 NC_003387.1 + 24941 0.67 0.721715
Target:  5'- cCGACgGCGGGcCGcCUgaugGCCUGGGUCGg -3'
miRNA:   3'- -GCUG-UGCUU-GCaGAa---CGGGUCCAGCg -5'
12798 5' -53.9 NC_003387.1 + 7940 0.68 0.71101
Target:  5'- -cGCGCGGGCcagCUUGUCgAGGUCGg -3'
miRNA:   3'- gcUGUGCUUGca-GAACGGgUCCAGCg -5'
12798 5' -53.9 NC_003387.1 + 6288 0.68 0.700228
Target:  5'- aCGACGCGAcCGUggccgUGCugaCCgAGGUCGCc -3'
miRNA:   3'- -GCUGUGCUuGCAga---ACG---GG-UCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 1477 0.68 0.689379
Target:  5'- gCGAgGCGAugGgcauaugGCCCAaGGUCaGCg -3'
miRNA:   3'- -GCUgUGCUugCagaa---CGGGU-CCAG-CG- -5'
12798 5' -53.9 NC_003387.1 + 31711 0.68 0.678475
Target:  5'- aCGAC-C-AACGUgUUaGCgCAGGUCGCa -3'
miRNA:   3'- -GCUGuGcUUGCAgAA-CGgGUCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 11977 0.69 0.645542
Target:  5'- uCGACGCccgccuugucgaGGGCGcgCUUGgUCAGGUUGCa -3'
miRNA:   3'- -GCUGUG------------CUUGCa-GAACgGGUCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 48840 0.69 0.645542
Target:  5'- uCGGCGCGAcgcacgGCGUgCacGCCCuGGUgCGCa -3'
miRNA:   3'- -GCUGUGCU------UGCA-GaaCGGGuCCA-GCG- -5'
12798 5' -53.9 NC_003387.1 + 34135 0.69 0.634526
Target:  5'- cCGAgGCGGGCGaccCUgacGCCUGGGUCGa -3'
miRNA:   3'- -GCUgUGCUUGCa--GAa--CGGGUCCAGCg -5'
12798 5' -53.9 NC_003387.1 + 33044 0.69 0.634526
Target:  5'- uCGA-ACGAGcCGUCgacGCCCAGGU-GCa -3'
miRNA:   3'- -GCUgUGCUU-GCAGaa-CGGGUCCAgCG- -5'
12798 5' -53.9 NC_003387.1 + 2519 0.69 0.623507
Target:  5'- uGACGCGcggguCGUCgUUGCCgucccGGUCGCg -3'
miRNA:   3'- gCUGUGCuu---GCAG-AACGGgu---CCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 10238 0.69 0.611396
Target:  5'- gCGACGCGAugagccgcgccgaGCG-CggGCUCaAGGUCGCc -3'
miRNA:   3'- -GCUGUGCU-------------UGCaGaaCGGG-UCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 29679 0.69 0.601503
Target:  5'- cCGACGuCG-ACGUCgacgugGCCgAGGUCGa -3'
miRNA:   3'- -GCUGU-GCuUGCAGaa----CGGgUCCAGCg -5'
12798 5' -53.9 NC_003387.1 + 32772 0.69 0.601503
Target:  5'- uCGACGCGGuACcUCUUGCCCGacGUCGa -3'
miRNA:   3'- -GCUGUGCU-UGcAGAACGGGUc-CAGCg -5'
12798 5' -53.9 NC_003387.1 + 28834 0.69 0.601503
Target:  5'- uCGGCGCGcagcACGUCggccaGCcacaCCGGGUCGCc -3'
miRNA:   3'- -GCUGUGCu---UGCAGaa---CG----GGUCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 1487 0.7 0.590536
Target:  5'- gGGCGuCG-ACGUCgaGCaCCAGGcCGCg -3'
miRNA:   3'- gCUGU-GCuUGCAGaaCG-GGUCCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 23408 0.7 0.568715
Target:  5'- -aGCGCGGccugGCGcUCgUGCCCGcGGUCGCc -3'
miRNA:   3'- gcUGUGCU----UGC-AGaACGGGU-CCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 31448 0.7 0.568715
Target:  5'- aCGACGCGGuGCGccacCUUGCCCGacuccucGUCGCg -3'
miRNA:   3'- -GCUGUGCU-UGCa---GAACGGGUc------CAGCG- -5'
12798 5' -53.9 NC_003387.1 + 29832 0.7 0.5471
Target:  5'- cCGuCGCGucgGUCUUGCCgGGGUCaGCc -3'
miRNA:   3'- -GCuGUGCuugCAGAACGGgUCCAG-CG- -5'
12798 5' -53.9 NC_003387.1 + 28078 0.7 0.546026
Target:  5'- gCGACcucgcgcagcaggGCGAgguGCGUCgggucGCCCAGG-CGCg -3'
miRNA:   3'- -GCUG-------------UGCU---UGCAGaa---CGGGUCCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 27242 0.71 0.525753
Target:  5'- uGACACGcGCgGUCgaggcgGCCCGgcaugccuGGUCGCg -3'
miRNA:   3'- gCUGUGCuUG-CAGaa----CGGGU--------CCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.