miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12799 3' -57.7 NC_003387.1 + 9268 0.66 0.584486
Target:  5'- aCGUCGCCGCcggucaGCAGCuuGAccuUGgccUCGUCGa -3'
miRNA:   3'- -GCAGCGGCG------CGUCGugUU---AC---AGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 40948 0.66 0.573767
Target:  5'- gGUCGCCaagguGCGCGaCGCGAUcGagGCCGa -3'
miRNA:   3'- gCAGCGG-----CGCGUcGUGUUA-CagCGGC- -5'
12799 3' -57.7 NC_003387.1 + 25466 0.66 0.573767
Target:  5'- gCGUCGCgGCucauGCGGCGCAuccUGUCGg-- -3'
miRNA:   3'- -GCAGCGgCG----CGUCGUGUu--ACAGCggc -5'
12799 3' -57.7 NC_003387.1 + 45113 0.66 0.573767
Target:  5'- uCGaCGCCGCGguGUACGagGUGaCGCa- -3'
miRNA:   3'- -GCaGCGGCGCguCGUGU--UACaGCGgc -5'
12799 3' -57.7 NC_003387.1 + 13027 0.66 0.573767
Target:  5'- uGcCGCUGCuGCAcGCGCugcGUCGCCu -3'
miRNA:   3'- gCaGCGGCG-CGU-CGUGuuaCAGCGGc -5'
12799 3' -57.7 NC_003387.1 + 34527 0.66 0.573767
Target:  5'- gCGUCGCCGaggcgcaccuCGCAGC-CGAUcGUCaGCgGg -3'
miRNA:   3'- -GCAGCGGC----------GCGUCGuGUUA-CAG-CGgC- -5'
12799 3' -57.7 NC_003387.1 + 30560 0.66 0.573767
Target:  5'- --cCGCCGcCGCGGC-CGGUacgCGCCGu -3'
miRNA:   3'- gcaGCGGC-GCGUCGuGUUAca-GCGGC- -5'
12799 3' -57.7 NC_003387.1 + 3899 0.66 0.563094
Target:  5'- uCG-CGCCGaGCAGCACGAccggcgggacgaUGgcCGCCGc -3'
miRNA:   3'- -GCaGCGGCgCGUCGUGUU------------ACa-GCGGC- -5'
12799 3' -57.7 NC_003387.1 + 47935 0.66 0.563094
Target:  5'- cCGUCGCCGCG-GGCcuGCGAcaUGaagucacggCGCCGg -3'
miRNA:   3'- -GCAGCGGCGCgUCG--UGUU--ACa--------GCGGC- -5'
12799 3' -57.7 NC_003387.1 + 36232 0.66 0.563094
Target:  5'- uCGUCGCaugaaggGCGCucuCGCAAUGguuuaCGCCGg -3'
miRNA:   3'- -GCAGCGg------CGCGuc-GUGUUACa----GCGGC- -5'
12799 3' -57.7 NC_003387.1 + 8273 0.66 0.563094
Target:  5'- aG-CGCCucGCGCAGCGCcucGUGcgCGUCGg -3'
miRNA:   3'- gCaGCGG--CGCGUCGUGu--UACa-GCGGC- -5'
12799 3' -57.7 NC_003387.1 + 28468 0.66 0.556716
Target:  5'- -aUCGCgGCGCAGCACuucacauaggCGUCGu -3'
miRNA:   3'- gcAGCGgCGCGUCGUGuuaca-----GCGGC- -5'
12799 3' -57.7 NC_003387.1 + 44508 0.66 0.552475
Target:  5'- uCGgCGuuGCGCuccaaacGCACGAcGUCGCUGu -3'
miRNA:   3'- -GCaGCggCGCGu------CGUGUUaCAGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 6805 0.66 0.552475
Target:  5'- gGUCGCCcUGCGGCucaagGCGcgGuUCGCCu -3'
miRNA:   3'- gCAGCGGcGCGUCG-----UGUuaC-AGCGGc -5'
12799 3' -57.7 NC_003387.1 + 35797 0.66 0.552475
Target:  5'- aCGUCGUa--GCGGCGCcccAUGUUGUCGg -3'
miRNA:   3'- -GCAGCGgcgCGUCGUGu--UACAGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 37741 0.66 0.552475
Target:  5'- uGUgCGCCaccguGCGCGGCGgGAUcUUGCCGu -3'
miRNA:   3'- gCA-GCGG-----CGCGUCGUgUUAcAGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 31152 0.67 0.546132
Target:  5'- --aUGCCGCGCGccugggccacggucuGCACGAcgacgcgggcGUCGCCGg -3'
miRNA:   3'- gcaGCGGCGCGU---------------CGUGUUa---------CAGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 11635 0.67 0.541917
Target:  5'- --cCGCCGCGCAGUggcuauuCAAcGUCGCg- -3'
miRNA:   3'- gcaGCGGCGCGUCGu------GUUaCAGCGgc -5'
12799 3' -57.7 NC_003387.1 + 39756 0.67 0.541917
Target:  5'- gGUgGCCGCcCGGUACGA-GcCGCCa -3'
miRNA:   3'- gCAgCGGCGcGUCGUGUUaCaGCGGc -5'
12799 3' -57.7 NC_003387.1 + 12785 0.67 0.541917
Target:  5'- uCGaUCGCCGCaauGCGcGCcucgcaacgaccGCAGUcGUCGCCGg -3'
miRNA:   3'- -GC-AGCGGCG---CGU-CG------------UGUUA-CAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.