Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12799 | 5' | -54.4 | NC_003387.1 | + | 11618 | 0.66 | 0.753927 |
Target: 5'- gGUCGUGCAGCGccagcagcucgcggcUCacgaucgccCCUCGaucGCGUCGAc -3' miRNA: 3'- -CAGCACGUUGU---------------AGa--------GGAGC---CGCAGCU- -5' |
|||||||
12799 | 5' | -54.4 | NC_003387.1 | + | 8918 | 0.66 | 0.770388 |
Target: 5'- aUCGUGCAGCA-CUCgUCGaggaaGCGggCGAc -3' miRNA: 3'- cAGCACGUUGUaGAGgAGC-----CGCa-GCU- -5' |
|||||||
12799 | 5' | -54.4 | NC_003387.1 | + | 8267 | 0.68 | 0.652278 |
Target: 5'- -gCGUGCAGCGccUCgcgcagcgCCUCGugcGCGUCGGc -3' miRNA: 3'- caGCACGUUGU--AGa-------GGAGC---CGCAGCU- -5' |
|||||||
12799 | 5' | -54.4 | NC_003387.1 | + | 6880 | 0.76 | 0.23839 |
Target: 5'- cUCGcGCAGgAUCUCCgCGGCGUCGu -3' miRNA: 3'- cAGCaCGUUgUAGAGGaGCCGCAGCu -5' |
|||||||
12799 | 5' | -54.4 | NC_003387.1 | + | 5296 | 0.69 | 0.59693 |
Target: 5'- uGUUGUGCAugAggccCUCCUCGGgcUCGGg -3' miRNA: 3'- -CAGCACGUugUa---GAGGAGCCgcAGCU- -5' |
|||||||
12799 | 5' | -54.4 | NC_003387.1 | + | 4163 | 0.68 | 0.663332 |
Target: 5'- cGUCGaUGCAcgccuggcACGUgaCCUCGGCG-CGGu -3' miRNA: 3'- -CAGC-ACGU--------UGUAgaGGAGCCGCaGCU- -5' |
|||||||
12799 | 5' | -54.4 | NC_003387.1 | + | 3467 | 0.72 | 0.38287 |
Target: 5'- gGUCGaUGC-GCGUCaCCcCGGCGUCGAg -3' miRNA: 3'- -CAGC-ACGuUGUAGaGGaGCCGCAGCU- -5' |
|||||||
12799 | 5' | -54.4 | NC_003387.1 | + | 2337 | 0.69 | 0.59693 |
Target: 5'- cUCG-GCggUGUCgaggccgCCgUCGGCGUCGAg -3' miRNA: 3'- cAGCaCGuuGUAGa------GG-AGCCGCAGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home