miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
128 3' -55.8 AC_000006.1 + 11162 0.66 0.572841
Target:  5'- uCUGAcgGCGCagcugUUCCUGGUGGuaCAGCa -3'
miRNA:   3'- cGACU--UGCGg----AAGGACCGCUgcGUCG- -5'
128 3' -55.8 AC_000006.1 + 12457 0.66 0.561677
Target:  5'- uGCUGAucGCGcCCUUCaccGacaGugGCAGCg -3'
miRNA:   3'- -CGACU--UGC-GGAAGgacCg--CugCGUCG- -5'
128 3' -55.8 AC_000006.1 + 21164 0.66 0.561677
Target:  5'- aGCgauaGAGCuCC-UCCUGGUugcgccugaggGugGCAGCa -3'
miRNA:   3'- -CGa---CUUGcGGaAGGACCG-----------CugCGUCG- -5'
128 3' -55.8 AC_000006.1 + 16052 0.66 0.558339
Target:  5'- cGCUGGacgagagcaaucccACGCCgagCCUGaagcccGUGACcuGCAGCa -3'
miRNA:   3'- -CGACU--------------UGCGGaa-GGAC------CGCUG--CGUCG- -5'
128 3' -55.8 AC_000006.1 + 8971 0.66 0.550573
Target:  5'- gGCUGGAgGCCaUC--GGCGACauCAGCg -3'
miRNA:   3'- -CGACUUgCGGaAGgaCCGCUGc-GUCG- -5'
128 3' -55.8 AC_000006.1 + 8418 0.66 0.528578
Target:  5'- --aGAGCGCUggCgUGcGCGAcgaCGCGGCg -3'
miRNA:   3'- cgaCUUGCGGaaGgAC-CGCU---GCGUCG- -5'
128 3' -55.8 AC_000006.1 + 11557 0.67 0.506915
Target:  5'- uGCUGAgccuGCGCCgggCgCUGGUagggGGCGCcGCc -3'
miRNA:   3'- -CGACU----UGCGGaa-G-GACCG----CUGCGuCG- -5'
128 3' -55.8 AC_000006.1 + 24114 0.67 0.484588
Target:  5'- gGgaGGACgaucucgGCCaggUCCgaGGCGACGguGCg -3'
miRNA:   3'- -CgaCUUG-------CGGa--AGGa-CCGCUGCguCG- -5'
128 3' -55.8 AC_000006.1 + 6244 0.67 0.475163
Target:  5'- cGCUGGugGCCa-CCUcGCcGCGCAGg -3'
miRNA:   3'- -CGACUugCGGaaGGAcCGcUGCGUCg -5'
128 3' -55.8 AC_000006.1 + 26123 0.67 0.464799
Target:  5'- aCUGAAUGUCUUa-UGGUGACuCGGCu -3'
miRNA:   3'- cGACUUGCGGAAggACCGCUGcGUCG- -5'
128 3' -55.8 AC_000006.1 + 9760 0.68 0.454555
Target:  5'- cGCgucguCGCCgaCCUGGCGcucgUGCAGCc -3'
miRNA:   3'- -CGacuu-GCGGaaGGACCGCu---GCGUCG- -5'
128 3' -55.8 AC_000006.1 + 1456 0.68 0.424579
Target:  5'- aGCU--GCGCCUaguuUCCUGG-GACGUuucaAGCu -3'
miRNA:   3'- -CGAcuUGCGGA----AGGACCgCUGCG----UCG- -5'
128 3' -55.8 AC_000006.1 + 10731 0.68 0.414853
Target:  5'- gGCUGGcuaGCGCCggcgCCUGcuacggccGCGGuCGCGGUg -3'
miRNA:   3'- -CGACU---UGCGGaa--GGAC--------CGCU-GCGUCG- -5'
128 3' -55.8 AC_000006.1 + 2255 0.68 0.405264
Target:  5'- --aGAGCGCCUUaCCUGGU-ACG-AGCu -3'
miRNA:   3'- cgaCUUGCGGAA-GGACCGcUGCgUCG- -5'
128 3' -55.8 AC_000006.1 + 15541 0.68 0.405264
Target:  5'- uGCgggGggUGCag---UGGCGGCGCGGCg -3'
miRNA:   3'- -CGa--CuuGCGgaaggACCGCUGCGUCG- -5'
128 3' -55.8 AC_000006.1 + 5255 0.69 0.377352
Target:  5'- aGUUGAGgGCCUc---GGCGGCGUGGCc -3'
miRNA:   3'- -CGACUUgCGGAaggaCCGCUGCGUCG- -5'
128 3' -55.8 AC_000006.1 + 11514 0.7 0.333791
Target:  5'- -gUGAGCGCgagCC-GGCGGCGCgAGCu -3'
miRNA:   3'- cgACUUGCGgaaGGaCCGCUGCG-UCG- -5'
128 3' -55.8 AC_000006.1 + 21226 0.7 0.309476
Target:  5'- aGCgguGGCGUgUUCgaUGGCGGCGCGGUg -3'
miRNA:   3'- -CGac-UUGCGgAAGg-ACCGCUGCGUCG- -5'
128 3' -55.8 AC_000006.1 + 8316 0.72 0.264954
Target:  5'- cGC-GGACGCgcUCCcGGCGGCaGCGGCg -3'
miRNA:   3'- -CGaCUUGCGgaAGGaCCGCUG-CGUCG- -5'
128 3' -55.8 AC_000006.1 + 7436 0.72 0.258059
Target:  5'- uGCUcGAGCGCCcaUUCCUGGaGAUGUGGg -3'
miRNA:   3'- -CGA-CUUGCGG--AAGGACCgCUGCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.