miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
128 5' -56.3 AC_000006.1 + 14201 0.66 0.492798
Target:  5'- gGUGCUGCuGcCGGGCugcGGGGUGGacuuCACa -3'
miRNA:   3'- -CACGGCG-C-GCCCG---UCCUACUaau-GUG- -5'
128 5' -56.3 AC_000006.1 + 20246 0.66 0.482149
Target:  5'- uUGuuGUGCuggaaGGGCAGGGUGAcgGCc- -3'
miRNA:   3'- cACggCGCG-----CCCGUCCUACUaaUGug -5'
128 5' -56.3 AC_000006.1 + 21308 0.66 0.471612
Target:  5'- -cGCCGCGCuGGGgAGGGccacGUUGCGg -3'
miRNA:   3'- caCGGCGCG-CCCgUCCUac--UAAUGUg -5'
128 5' -56.3 AC_000006.1 + 10872 0.66 0.461193
Target:  5'- cUGCCGguuucggGCGGGCAGGGagc-UGCGCg -3'
miRNA:   3'- cACGGCg------CGCCCGUCCUacuaAUGUG- -5'
128 5' -56.3 AC_000006.1 + 17592 0.66 0.461193
Target:  5'- -aGCUGCcuucgguggaGCGGGCGuGGGUGGUggagGCAg -3'
miRNA:   3'- caCGGCG----------CGCCCGU-CCUACUAa---UGUg -5'
128 5' -56.3 AC_000006.1 + 9244 0.67 0.450897
Target:  5'- -cGCCGcCGCGGGgA-GAUGAUcgaGCGCu -3'
miRNA:   3'- caCGGC-GCGCCCgUcCUACUAa--UGUG- -5'
128 5' -56.3 AC_000006.1 + 10123 0.67 0.440728
Target:  5'- aUGuuGCGCaGcGGCAGGAaauaguccaUGGUcgGCACg -3'
miRNA:   3'- cACggCGCG-C-CCGUCCU---------ACUAa-UGUG- -5'
128 5' -56.3 AC_000006.1 + 10687 0.67 0.42079
Target:  5'- -cGCCGgGgGGGUGGGAcGcAUUugGCg -3'
miRNA:   3'- caCGGCgCgCCCGUCCUaC-UAAugUG- -5'
128 5' -56.3 AC_000006.1 + 20329 0.68 0.401406
Target:  5'- -gGCCGaugaGCGGGUAGGGgaagUugGCg -3'
miRNA:   3'- caCGGCg---CGCCCGUCCUacuaAugUG- -5'
128 5' -56.3 AC_000006.1 + 8383 0.68 0.373418
Target:  5'- cGUGgCGCuCGGGCAGGucccgGUG-UUGCGCc -3'
miRNA:   3'- -CACgGCGcGCCCGUCC-----UACuAAUGUG- -5'
128 5' -56.3 AC_000006.1 + 21758 0.7 0.275243
Target:  5'- aUGCaGCGCGGcGCGGGgAUGAUgcugaugcccgUGCACu -3'
miRNA:   3'- cACGgCGCGCC-CGUCC-UACUA-----------AUGUG- -5'
128 5' -56.3 AC_000006.1 + 8349 0.71 0.231904
Target:  5'- -gGCCcCGCGGGCAGGGgcggcagagGCACg -3'
miRNA:   3'- caCGGcGCGCCCGUCCUacuaa----UGUG- -5'
128 5' -56.3 AC_000006.1 + 12206 1.09 0.00039
Target:  5'- cGUGCCGCGCGGGCAGGAUGAUUACACc -3'
miRNA:   3'- -CACGGCGCGCCCGUCCUACUAAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.