Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12800 | 3' | -53.3 | NC_003387.1 | + | 5913 | 0.68 | 0.694141 |
Target: 5'- uUGCGCcgcUUACGCGC-CGggGGcUGACa -3' miRNA: 3'- gGCGCGa--AGUGCGCGuGCaaUC-ACUG- -5' |
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12800 | 3' | -53.3 | NC_003387.1 | + | 17162 | 0.68 | 0.694141 |
Target: 5'- cCCGCGCUgagCugGUGCGCcgccugGGcGGCg -3' miRNA: 3'- -GGCGCGAa--GugCGCGUGcaa---UCaCUG- -5' |
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12800 | 3' | -53.3 | NC_003387.1 | + | 4928 | 0.68 | 0.694141 |
Target: 5'- cCCgGCGCggcgUCGCGCGUuguCGaacGUGACa -3' miRNA: 3'- -GG-CGCGa---AGUGCGCGu--GCaauCACUG- -5' |
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12800 | 3' | -53.3 | NC_003387.1 | + | 39398 | 0.68 | 0.683142 |
Target: 5'- cUCGUGCgcCugGCGCGCG--AGUGGg -3' miRNA: 3'- -GGCGCGaaGugCGCGUGCaaUCACUg -5' |
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12800 | 3' | -53.3 | NC_003387.1 | + | 4832 | 0.68 | 0.683142 |
Target: 5'- aCGCGCUugUCggcgACGUGCACGccgAGaUGGCg -3' miRNA: 3'- gGCGCGA--AG----UGCGCGUGCaa-UC-ACUG- -5' |
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12800 | 3' | -53.3 | NC_003387.1 | + | 48548 | 0.69 | 0.661007 |
Target: 5'- aCCGCGCcgaggUCACGUGCcagGCGUgcaucGACg -3' miRNA: 3'- -GGCGCGa----AGUGCGCG---UGCAauca-CUG- -5' |
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12800 | 3' | -53.3 | NC_003387.1 | + | 4564 | 0.69 | 0.649892 |
Target: 5'- cCUGCGCgacCGCGCGgGCcucGGUGGCg -3' miRNA: 3'- -GGCGCGaa-GUGCGCgUGcaaUCACUG- -5' |
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12800 | 3' | -53.3 | NC_003387.1 | + | 23091 | 0.69 | 0.649892 |
Target: 5'- cUCGCGCcgUCGCGCGUGCGgugcaccGACu -3' miRNA: 3'- -GGCGCGa-AGUGCGCGUGCaauca--CUG- -5' |
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12800 | 3' | -53.3 | NC_003387.1 | + | 29321 | 0.69 | 0.649892 |
Target: 5'- gCCGCGCUUguCGgGCAUGUUcagcucgucGGcGACc -3' miRNA: 3'- -GGCGCGAAguGCgCGUGCAA---------UCaCUG- -5' |
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12800 | 3' | -53.3 | NC_003387.1 | + | 40361 | 0.69 | 0.638761 |
Target: 5'- gCGgGCcgUCGCG-GCgGCGUUGGUGAUg -3' miRNA: 3'- gGCgCGa-AGUGCgCG-UGCAAUCACUG- -5' |
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12800 | 3' | -53.3 | NC_003387.1 | + | 32223 | 0.7 | 0.605371 |
Target: 5'- gCCGCGCUgCGCGaGCGCGacgAGcUGGCc -3' miRNA: 3'- -GGCGCGAaGUGCgCGUGCaa-UC-ACUG- -5' |
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12800 | 3' | -53.3 | NC_003387.1 | + | 24654 | 0.7 | 0.583212 |
Target: 5'- gCUGCGCgaggUCGCcaGCGC-CGagGGUGACu -3' miRNA: 3'- -GGCGCGa---AGUG--CGCGuGCaaUCACUG- -5' |
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12800 | 3' | -53.3 | NC_003387.1 | + | 19661 | 0.71 | 0.550308 |
Target: 5'- gCgGCGCUUgGCGCGCACcc-GGUGcgGCa -3' miRNA: 3'- -GgCGCGAAgUGCGCGUGcaaUCAC--UG- -5' |
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12800 | 3' | -53.3 | NC_003387.1 | + | 20503 | 0.73 | 0.427315 |
Target: 5'- gUCGCGC-UCGCGCaGCGCGgcgucgcgcucgucGGUGACg -3' miRNA: 3'- -GGCGCGaAGUGCG-CGUGCaa------------UCACUG- -5' |
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12800 | 3' | -53.3 | NC_003387.1 | + | 7904 | 0.74 | 0.370873 |
Target: 5'- cUCGUGCc-CGCGCGCACGU--GUGGCc -3' miRNA: 3'- -GGCGCGaaGUGCGCGUGCAauCACUG- -5' |
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12800 | 3' | -53.3 | NC_003387.1 | + | 44468 | 0.75 | 0.345043 |
Target: 5'- -gGCGCUgCACGCcCGCGUgacgGGUGACc -3' miRNA: 3'- ggCGCGAaGUGCGcGUGCAa---UCACUG- -5' |
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12800 | 3' | -53.3 | NC_003387.1 | + | 32718 | 0.76 | 0.297345 |
Target: 5'- -aGgGCUUCACgGCGCACGgcgcGGUGGCc -3' miRNA: 3'- ggCgCGAAGUG-CGCGUGCaa--UCACUG- -5' |
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12800 | 3' | -53.3 | NC_003387.1 | + | 37275 | 1.11 | 0.001226 |
Target: 5'- gCCGCGCUUCACGCGCACGUUAGUGACc -3' miRNA: 3'- -GGCGCGAAGUGCGCGUGCAAUCACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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