miRNA display CGI


Results 21 - 40 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12800 5' -59.7 NC_003387.1 + 23851 0.66 0.479828
Target:  5'- gCCGCCGCaGUCGGggccguggaccgGCGacCCGGUGUGg -3'
miRNA:   3'- -GGCGGUGgCGGUCaa----------UGC--GGCCACGC- -5'
12800 5' -59.7 NC_003387.1 + 3534 0.66 0.479828
Target:  5'- cCCGCCGCCGCCccAGgcggcugcucagGCGCUcaacgaGG-GCGg -3'
miRNA:   3'- -GGCGGUGGCGG--UCaa----------UGCGG------CCaCGC- -5'
12800 5' -59.7 NC_003387.1 + 5973 0.66 0.473961
Target:  5'- gUCGCUcgACCcgGCCGGUUGcCGCC-GUGCa -3'
miRNA:   3'- -GGCGG--UGG--CGGUCAAU-GCGGcCACGc -5'
12800 5' -59.7 NC_003387.1 + 9643 0.66 0.472987
Target:  5'- cCCGUCACCcugguguGCCAGcccucGgGgCGGUGCGg -3'
miRNA:   3'- -GGCGGUGG-------CGGUCaa---UgCgGCCACGC- -5'
12800 5' -59.7 NC_003387.1 + 1108 0.66 0.47007
Target:  5'- cCCGCgagcgcggguucgGCCGUgGGUU-CGCCGGUGuCGa -3'
miRNA:   3'- -GGCGg------------UGGCGgUCAAuGCGGCCAC-GC- -5'
12800 5' -59.7 NC_003387.1 + 40494 0.67 0.464264
Target:  5'- gCGCCGCUGCgCuGgcgacCGCCGGUGg- -3'
miRNA:   3'- gGCGGUGGCG-GuCaau--GCGGCCACgc -5'
12800 5' -59.7 NC_003387.1 + 18673 0.67 0.454672
Target:  5'- gCGCUuagGCCGCCccacACGCCgaccaGGUGCGg -3'
miRNA:   3'- gGCGG---UGGCGGucaaUGCGG-----CCACGC- -5'
12800 5' -59.7 NC_003387.1 + 29001 0.67 0.454672
Target:  5'- aUCGCCugCGCCgAGUcguuCGCCGccuggGCGu -3'
miRNA:   3'- -GGCGGugGCGG-UCAau--GCGGCca---CGC- -5'
12800 5' -59.7 NC_003387.1 + 32512 0.67 0.454672
Target:  5'- aCUGCCGCUGCguGc-ACGCCcggccGUGCGa -3'
miRNA:   3'- -GGCGGUGGCGguCaaUGCGGc----CACGC- -5'
12800 5' -59.7 NC_003387.1 + 35404 0.67 0.454672
Target:  5'- gCGCCACCGCaGGUca-GC-GGUGUGa -3'
miRNA:   3'- gGCGGUGGCGgUCAaugCGgCCACGC- -5'
12800 5' -59.7 NC_003387.1 + 48818 0.67 0.445188
Target:  5'- aUCGUC-CCGCCGGUcgUGCuGCuCGGcGCGa -3'
miRNA:   3'- -GGCGGuGGCGGUCA--AUG-CG-GCCaCGC- -5'
12800 5' -59.7 NC_003387.1 + 41503 0.67 0.445188
Target:  5'- gCCGUCGCCGUCGGcccACGCC--UGCa -3'
miRNA:   3'- -GGCGGUGGCGGUCaa-UGCGGccACGc -5'
12800 5' -59.7 NC_003387.1 + 13403 0.67 0.445188
Target:  5'- -aGUgGCCGaCGGUUAagucggcgcuCGCCGGUGUGa -3'
miRNA:   3'- ggCGgUGGCgGUCAAU----------GCGGCCACGC- -5'
12800 5' -59.7 NC_003387.1 + 21856 0.67 0.445188
Target:  5'- cCCGCUACCGCaaCAGUUcACGgCCGcGgGCa -3'
miRNA:   3'- -GGCGGUGGCG--GUCAA-UGC-GGC-CaCGc -5'
12800 5' -59.7 NC_003387.1 + 21797 0.67 0.443304
Target:  5'- aCCGCgGCgGCCAGcucggcgagcgACGCCGuG-GCGa -3'
miRNA:   3'- -GGCGgUGgCGGUCaa---------UGCGGC-CaCGC- -5'
12800 5' -59.7 NC_003387.1 + 17034 0.67 0.435816
Target:  5'- gCgGCUGCCGCCcu---CGCCGG-GCGu -3'
miRNA:   3'- -GgCGGUGGCGGucaauGCGGCCaCGC- -5'
12800 5' -59.7 NC_003387.1 + 45425 0.67 0.435816
Target:  5'- aCgGCC-CCgGCgAGUUAcCGCCGG-GCGu -3'
miRNA:   3'- -GgCGGuGG-CGgUCAAU-GCGGCCaCGC- -5'
12800 5' -59.7 NC_003387.1 + 4484 0.67 0.435816
Target:  5'- gCCGCgGCCGaCCGGgcGCGacaCGaucGUGCGg -3'
miRNA:   3'- -GGCGgUGGC-GGUCaaUGCg--GC---CACGC- -5'
12800 5' -59.7 NC_003387.1 + 17148 0.67 0.435816
Target:  5'- gCUGUCACCGgCGGcccGCGCUgagcuGGUGCGc -3'
miRNA:   3'- -GGCGGUGGCgGUCaa-UGCGG-----CCACGC- -5'
12800 5' -59.7 NC_003387.1 + 43699 0.67 0.434885
Target:  5'- aUCGCCGacggcgcCCGCCAGgugcucgACGgCGGcaUGCGg -3'
miRNA:   3'- -GGCGGU-------GGCGGUCaa-----UGCgGCC--ACGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.