miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12801 5' -53.4 NC_003387.1 + 49512 0.66 0.773615
Target:  5'- uUCACGCUucgcggcgagcuuGCGCuGCUGGUUGGc -3'
miRNA:   3'- uAGUGCGAuuu----------CGCGcUGACCAGCUu -5'
12801 5' -53.4 NC_003387.1 + 3964 0.66 0.77257
Target:  5'- gGUCGCGCUGcaAGGCucgGCGACccgcgGGUCa-- -3'
miRNA:   3'- -UAGUGCGAU--UUCG---CGCUGa----CCAGcuu -5'
12801 5' -53.4 NC_003387.1 + 15625 0.66 0.77257
Target:  5'- -gCACGUcgAGGGCGCGcACggcgaGGUCGAc -3'
miRNA:   3'- uaGUGCGa-UUUCGCGC-UGa----CCAGCUu -5'
12801 5' -53.4 NC_003387.1 + 15785 0.66 0.762042
Target:  5'- aGUCGCGCUuuAGCGUGAUcauGUCGc- -3'
miRNA:   3'- -UAGUGCGAuuUCGCGCUGac-CAGCuu -5'
12801 5' -53.4 NC_003387.1 + 15455 0.67 0.707508
Target:  5'- --uGCGCgUGAAGCGCGGCgaggaUGGUCu-- -3'
miRNA:   3'- uagUGCG-AUUUCGCGCUG-----ACCAGcuu -5'
12801 5' -53.4 NC_003387.1 + 18707 0.67 0.673732
Target:  5'- gGUCGCGCagcgccAGGGCGCGGCacucGUCGAGc -3'
miRNA:   3'- -UAGUGCGa-----UUUCGCGCUGac--CAGCUU- -5'
12801 5' -53.4 NC_003387.1 + 11931 0.68 0.650982
Target:  5'- aAUCG-GCUGcGAGCGCGGgaucUUGGUCGAGg -3'
miRNA:   3'- -UAGUgCGAU-UUCGCGCU----GACCAGCUU- -5'
12801 5' -53.4 NC_003387.1 + 6787 0.69 0.582637
Target:  5'- -cCugGCc-GAGCGCGACaUGGUCGc- -3'
miRNA:   3'- uaGugCGauUUCGCGCUG-ACCAGCuu -5'
12801 5' -53.4 NC_003387.1 + 11999 0.71 0.473062
Target:  5'- --gACGUgu-GGCGCGGcCUGGUCGAc -3'
miRNA:   3'- uagUGCGauuUCGCGCU-GACCAGCUu -5'
12801 5' -53.4 NC_003387.1 + 32224 0.71 0.442179
Target:  5'- -cCGCGCUGcgcGAGCGCGacgaGCUGGcCGAc -3'
miRNA:   3'- uaGUGCGAU---UUCGCGC----UGACCaGCUu -5'
12801 5' -53.4 NC_003387.1 + 13077 0.71 0.432141
Target:  5'- -cCACGCcau-GCGCGACaccgGGUCGAGg -3'
miRNA:   3'- uaGUGCGauuuCGCGCUGa---CCAGCUU- -5'
12801 5' -53.4 NC_003387.1 + 39155 0.75 0.276525
Target:  5'- -cCGCGCcgAGGGCGUGuACUGGUCGGu -3'
miRNA:   3'- uaGUGCGa-UUUCGCGC-UGACCAGCUu -5'
12801 5' -53.4 NC_003387.1 + 22017 0.75 0.262294
Target:  5'- cGUgACGCUAGAGCGCGGC--GUCGAc -3'
miRNA:   3'- -UAgUGCGAUUUCGCGCUGacCAGCUu -5'
12801 5' -53.4 NC_003387.1 + 36942 1.04 0.002553
Target:  5'- gAUCACGCUAAAGCGCGACUGGUCGAAc -3'
miRNA:   3'- -UAGUGCGAUUUCGCGCUGACCAGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.