miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12802 5' -55.6 NC_003387.1 + 46364 0.67 0.610611
Target:  5'- gGCCGaggcCAAGCGCGAcacgGUGGGCGCa-- -3'
miRNA:   3'- gUGGC----GUUCGUGUUa---CGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 15375 0.67 0.566291
Target:  5'- uGCCGCAgauAGCGCAGcccGC-GGCGgGGGc -3'
miRNA:   3'- gUGGCGU---UCGUGUUa--CGuCCGCgCUC- -5'
12802 5' -55.6 NC_003387.1 + 35668 0.67 0.610611
Target:  5'- gACCGCGGGCGguGgcugaGCGGGCacguGUGGGg -3'
miRNA:   3'- gUGGCGUUCGUguUa----CGUCCG----CGCUC- -5'
12802 5' -55.6 NC_003387.1 + 33749 0.67 0.610611
Target:  5'- gCACCccgGCAAGgGCAAcgGCGGcGCcGCGAGc -3'
miRNA:   3'- -GUGG---CGUUCgUGUUa-CGUC-CG-CGCUC- -5'
12802 5' -55.6 NC_003387.1 + 35407 0.67 0.57731
Target:  5'- cCACCGCAGGUcaGCGGUGUgauuGGCG-GAu -3'
miRNA:   3'- -GUGGCGUUCG--UGUUACGu---CCGCgCUc -5'
12802 5' -55.6 NC_003387.1 + 14091 0.67 0.57731
Target:  5'- aACUGCAgcgccAGCGCGGccUGCGGGC-CGAa -3'
miRNA:   3'- gUGGCGU-----UCGUGUU--ACGUCCGcGCUc -5'
12802 5' -55.6 NC_003387.1 + 15438 0.67 0.566291
Target:  5'- gCGCCGaCGAGCGCGc--CAGGCGCc-- -3'
miRNA:   3'- -GUGGC-GUUCGUGUuacGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 11086 0.67 0.588375
Target:  5'- gUACCGC-AGCGCcuuaGCuuGGGCGCGGu -3'
miRNA:   3'- -GUGGCGuUCGUGuua-CG--UCCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 14646 0.67 0.555327
Target:  5'- gGCCGCcgcGCACAGUGaCGcGGCGCu-- -3'
miRNA:   3'- gUGGCGuu-CGUGUUAC-GU-CCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 40453 0.67 0.599479
Target:  5'- gGCCGCcGGuCGC----CAGGCGCGGGa -3'
miRNA:   3'- gUGGCGuUC-GUGuuacGUCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 5412 0.67 0.610611
Target:  5'- aCGCCGCAAGCguuGCAGccUGC-GGCGUu-- -3'
miRNA:   3'- -GUGGCGUUCG---UGUU--ACGuCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 52219 0.67 0.610611
Target:  5'- aACCGCGGuCGCcacGCGGGCGCGc- -3'
miRNA:   3'- gUGGCGUUcGUGuuaCGUCCGCGCuc -5'
12802 5' -55.6 NC_003387.1 + 6939 0.67 0.588375
Target:  5'- uCAUCGCGgccuGCGCAGcggcggGCAGGCGCc-- -3'
miRNA:   3'- -GUGGCGUu---CGUGUUa-----CGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 47930 0.67 0.610611
Target:  5'- gGCgGCAGGCAUGggcacgacgccGUGUGGGcCGCGAa -3'
miRNA:   3'- gUGgCGUUCGUGU-----------UACGUCC-GCGCUc -5'
12802 5' -55.6 NC_003387.1 + 35208 0.67 0.599479
Target:  5'- aGCCGCu-GCGC-AUGCuGGC-CGAGc -3'
miRNA:   3'- gUGGCGuuCGUGuUACGuCCGcGCUC- -5'
12802 5' -55.6 NC_003387.1 + 40605 0.67 0.57731
Target:  5'- aCACCGCAuuucgaGGCGgGccGguGGCGUGGu -3'
miRNA:   3'- -GUGGCGU------UCGUgUuaCguCCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 45116 0.67 0.57731
Target:  5'- aCGCCGCGGuGUACGAgGUgacgcauuucgAGGCGCGGc -3'
miRNA:   3'- -GUGGCGUU-CGUGUUaCG-----------UCCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 3300 0.67 0.588375
Target:  5'- gGCCGCcgacucGGGCGCcgaGGUGCuguGGCGUGAc -3'
miRNA:   3'- gUGGCG------UUCGUG---UUACGu--CCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 7356 0.67 0.599479
Target:  5'- gUACCGCAccGGCAUggUuGCggucgaaauGGGCaGCGAGc -3'
miRNA:   3'- -GUGGCGU--UCGUGuuA-CG---------UCCG-CGCUC- -5'
12802 5' -55.6 NC_003387.1 + 46707 0.67 0.599479
Target:  5'- uGCCGCuGGaCGCcaaGCAGGCggGCGAGu -3'
miRNA:   3'- gUGGCGuUC-GUGuuaCGUCCG--CGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.