Results 61 - 80 of 127 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 14933 | 0.68 | 0.501595 |
Target: 5'- gACCGCGGGUGCugcgccCAGGCGCGc- -3' miRNA: 3'- gUGGCGUUCGUGuuac--GUCCGCGCuc -5' |
|||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 22411 | 0.68 | 0.501595 |
Target: 5'- gCGCCGCcAGCccuggUAAUGCgcgucgucccAGGCGCGGGc -3' miRNA: 3'- -GUGGCGuUCGu----GUUACG----------UCCGCGCUC- -5' |
|||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 35937 | 0.68 | 0.501595 |
Target: 5'- gCAUCGCcAGCGCAcuccaaaaGUGCugcgcGGUGCGGGu -3' miRNA: 3'- -GUGGCGuUCGUGU--------UACGu----CCGCGCUC- -5' |
|||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 11935 | 0.68 | 0.512173 |
Target: 5'- gGCUGCGAGCGCGGgaucuugGUcgAGGCGCa-- -3' miRNA: 3'- gUGGCGUUCGUGUUa------CG--UCCGCGcuc -5' |
|||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 32197 | 0.68 | 0.512173 |
Target: 5'- aCACCGCAGGg-----GCAGGCGCa-- -3' miRNA: 3'- -GUGGCGUUCguguuaCGUCCGCGcuc -5' |
|||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 52596 | 0.68 | 0.512173 |
Target: 5'- gAUCGCGAGgGCGAccgcaucgagGCGGGCGCGc- -3' miRNA: 3'- gUGGCGUUCgUGUUa---------CGUCCGCGCuc -5' |
|||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 14162 | 0.67 | 0.566291 |
Target: 5'- gCACCucgcCGGGC-CGGgccGCGGGCGUGAGg -3' miRNA: 3'- -GUGGc---GUUCGuGUUa--CGUCCGCGCUC- -5' |
|||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 32516 | 0.67 | 0.565192 |
Target: 5'- cCGCUGCGuGCACGcccggccGUGCgAGGCGCa-- -3' miRNA: 3'- -GUGGCGUuCGUGU-------UACG-UCCGCGcuc -5' |
|||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 9209 | 0.67 | 0.566291 |
Target: 5'- gACCgGCAccccGCGCGcuuuccugGUGgGGGCGCGGGg -3' miRNA: 3'- gUGG-CGUu---CGUGU--------UACgUCCGCGCUC- -5' |
|||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 37317 | 0.67 | 0.57731 |
Target: 5'- cCACCGCcAGUuacgcCGGUGCGGGUaCGGGu -3' miRNA: 3'- -GUGGCGuUCGu----GUUACGUCCGcGCUC- -5' |
|||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 14646 | 0.67 | 0.555327 |
Target: 5'- gGCCGCcgcGCACAGUGaCGcGGCGCu-- -3' miRNA: 3'- gUGGCGuu-CGUGUUAC-GU-CCGCGcuc -5' |
|||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 15375 | 0.67 | 0.566291 |
Target: 5'- uGCCGCAgauAGCGCAGcccGC-GGCGgGGGc -3' miRNA: 3'- gUGGCGU---UCGUGUUa--CGuCCGCgCUC- -5' |
|||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 15438 | 0.67 | 0.566291 |
Target: 5'- gCGCCGaCGAGCGCGc--CAGGCGCc-- -3' miRNA: 3'- -GUGGC-GUUCGUGUuacGUCCGCGcuc -5' |
|||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 14091 | 0.67 | 0.57731 |
Target: 5'- aACUGCAgcgccAGCGCGGccUGCGGGC-CGAa -3' miRNA: 3'- gUGGCGU-----UCGUGUU--ACGUCCGcGCUc -5' |
|||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 35407 | 0.67 | 0.57731 |
Target: 5'- cCACCGCAGGUcaGCGGUGUgauuGGCG-GAu -3' miRNA: 3'- -GUGGCGUUCG--UGUUACGu---CCGCgCUc -5' |
|||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 6939 | 0.67 | 0.588375 |
Target: 5'- uCAUCGCGgccuGCGCAGcggcggGCAGGCGCc-- -3' miRNA: 3'- -GUGGCGUu---CGUGUUa-----CGUCCGCGcuc -5' |
|||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 11086 | 0.67 | 0.588375 |
Target: 5'- gUACCGC-AGCGCcuuaGCuuGGGCGCGGu -3' miRNA: 3'- -GUGGCGuUCGUGuua-CG--UCCGCGCUc -5' |
|||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 40453 | 0.67 | 0.599479 |
Target: 5'- gGCCGCcGGuCGC----CAGGCGCGGGa -3' miRNA: 3'- gUGGCGuUC-GUGuuacGUCCGCGCUC- -5' |
|||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 5412 | 0.67 | 0.610611 |
Target: 5'- aCGCCGCAAGCguuGCAGccUGC-GGCGUu-- -3' miRNA: 3'- -GUGGCGUUCG---UGUU--ACGuCCGCGcuc -5' |
|||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 52219 | 0.67 | 0.610611 |
Target: 5'- aACCGCGGuCGCcacGCGGGCGCGc- -3' miRNA: 3'- gUGGCGUUcGUGuuaCGUCCGCGCuc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home