Results 41 - 60 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 5018 | 0.69 | 0.460309 |
Target: 5'- gCACgGCAGGCucACGAggGCGGcgcuGCGCGAGu -3' miRNA: 3'- -GUGgCGUUCG--UGUUa-CGUC----CGCGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 31961 | 0.69 | 0.470466 |
Target: 5'- gGCCGac-GCGCcuUGCAGGCGCa-- -3' miRNA: 3'- gUGGCguuCGUGuuACGUCCGCGcuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 34212 | 0.69 | 0.470466 |
Target: 5'- cCACCGCGgcggcccgagAGCAUGcUGCAGGCccuCGGGg -3' miRNA: 3'- -GUGGCGU----------UCGUGUuACGUCCGc--GCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 44440 | 0.69 | 0.470466 |
Target: 5'- cCGCCGaCGcGCACGAgGCGcuGCGCGAGg -3' miRNA: 3'- -GUGGC-GUuCGUGUUaCGUc-CGCGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 38201 | 0.69 | 0.470466 |
Target: 5'- gGCCGcCGAGUACcgcacGCAGGCGCa-- -3' miRNA: 3'- gUGGC-GUUCGUGuua--CGUCCGCGcuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 3564 | 0.69 | 0.477644 |
Target: 5'- gACCGCcuGCGCGcugguGUGCaccgacacguguacAGGCGCGAc -3' miRNA: 3'- gUGGCGuuCGUGU-----UACG--------------UCCGCGCUc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 41940 | 0.69 | 0.480736 |
Target: 5'- aCGCCGaCGAcCcgACGAUGCAGGCcgccaGCGAGg -3' miRNA: 3'- -GUGGC-GUUcG--UGUUACGUCCG-----CGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 28780 | 0.69 | 0.491114 |
Target: 5'- uGCUGCAgcaugggcacuGGCACAccGC-GGCGUGGGa -3' miRNA: 3'- gUGGCGU-----------UCGUGUuaCGuCCGCGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 46599 | 0.69 | 0.491114 |
Target: 5'- -gUCGCcAGCACcg-GCAGGUGCGuGg -3' miRNA: 3'- guGGCGuUCGUGuuaCGUCCGCGCuC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 15094 | 0.69 | 0.491114 |
Target: 5'- uCACUGCGgcGGCgauuaccucgGCAGUGC-GGUGCGGGu -3' miRNA: 3'- -GUGGCGU--UCG----------UGUUACGuCCGCGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 18523 | 0.69 | 0.495295 |
Target: 5'- cCGCCGCGguGGCACGcaggcguucgcgaacAcGCAGGCGUGuGc -3' miRNA: 3'- -GUGGCGU--UCGUGU---------------UaCGUCCGCGCuC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 35937 | 0.68 | 0.501595 |
Target: 5'- gCAUCGCcAGCGCAcuccaaaaGUGCugcgcGGUGCGGGu -3' miRNA: 3'- -GUGGCGuUCGUGU--------UACGu----CCGCGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 22411 | 0.68 | 0.501595 |
Target: 5'- gCGCCGCcAGCccuggUAAUGCgcgucgucccAGGCGCGGGc -3' miRNA: 3'- -GUGGCGuUCGu----GUUACG----------UCCGCGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 2899 | 0.68 | 0.501595 |
Target: 5'- uCGCuCGcCGGGCGCg--GCAGGCcGCGGGc -3' miRNA: 3'- -GUG-GC-GUUCGUGuuaCGUCCG-CGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 14933 | 0.68 | 0.501595 |
Target: 5'- gACCGCGGGUGCugcgccCAGGCGCGc- -3' miRNA: 3'- gUGGCGUUCGUGuuac--GUCCGCGCuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 10918 | 0.68 | 0.512173 |
Target: 5'- gCGCUGCAGGaCAUggUcGCgcaGGGCGCGGu -3' miRNA: 3'- -GUGGCGUUC-GUGuuA-CG---UCCGCGCUc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 11935 | 0.68 | 0.512173 |
Target: 5'- gGCUGCGAGCGCGGgaucuugGUcgAGGCGCa-- -3' miRNA: 3'- gUGGCGUUCGUGUUa------CG--UCCGCGcuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 32197 | 0.68 | 0.512173 |
Target: 5'- aCACCGCAGGg-----GCAGGCGCa-- -3' miRNA: 3'- -GUGGCGUUCguguuaCGUCCGCGcuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 52596 | 0.68 | 0.512173 |
Target: 5'- gAUCGCGAGgGCGAccgcaucgagGCGGGCGCGc- -3' miRNA: 3'- gUGGCGUUCgUGUUa---------CGUCCGCGCuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 34696 | 0.68 | 0.512173 |
Target: 5'- aCGCCGUggGCcugguAC-AUGC-GGCGCGAc -3' miRNA: 3'- -GUGGCGuuCG-----UGuUACGuCCGCGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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