Results 81 - 100 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 11086 | 0.67 | 0.588375 |
Target: 5'- gUACCGC-AGCGCcuuaGCuuGGGCGCGGu -3' miRNA: 3'- -GUGGCGuUCGUGuua-CG--UCCGCGCUc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 6939 | 0.67 | 0.588375 |
Target: 5'- uCAUCGCGgccuGCGCAGcggcggGCAGGCGCc-- -3' miRNA: 3'- -GUGGCGUu---CGUGUUa-----CGUCCGCGcuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 7356 | 0.67 | 0.599479 |
Target: 5'- gUACCGCAccGGCAUggUuGCggucgaaauGGGCaGCGAGc -3' miRNA: 3'- -GUGGCGU--UCGUGuuA-CG---------UCCG-CGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 46707 | 0.67 | 0.599479 |
Target: 5'- uGCCGCuGGaCGCcaaGCAGGCggGCGAGu -3' miRNA: 3'- gUGGCGuUC-GUGuuaCGUCCG--CGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 40453 | 0.67 | 0.599479 |
Target: 5'- gGCCGCcGGuCGC----CAGGCGCGGGa -3' miRNA: 3'- gUGGCGuUC-GUGuuacGUCCGCGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 35208 | 0.67 | 0.599479 |
Target: 5'- aGCCGCu-GCGC-AUGCuGGC-CGAGc -3' miRNA: 3'- gUGGCGuuCGUGuUACGuCCGcGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 40986 | 0.67 | 0.610611 |
Target: 5'- aAgCGCAAGCAUggUGCcugaucGGCGuCGAc -3' miRNA: 3'- gUgGCGUUCGUGuuACGu-----CCGC-GCUc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 5412 | 0.67 | 0.610611 |
Target: 5'- aCGCCGCAAGCguuGCAGccUGC-GGCGUu-- -3' miRNA: 3'- -GUGGCGUUCG---UGUU--ACGuCCGCGcuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 52219 | 0.67 | 0.610611 |
Target: 5'- aACCGCGGuCGCcacGCGGGCGCGc- -3' miRNA: 3'- gUGGCGUUcGUGuuaCGUCCGCGCuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 46364 | 0.67 | 0.610611 |
Target: 5'- gGCCGaggcCAAGCGCGAcacgGUGGGCGCa-- -3' miRNA: 3'- gUGGC----GUUCGUGUUa---CGUCCGCGcuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 47307 | 0.67 | 0.610611 |
Target: 5'- aCGCCGCAGGCuGCAAcgcuUGC-GGCGUu-- -3' miRNA: 3'- -GUGGCGUUCG-UGUU----ACGuCCGCGcuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 18522 | 0.67 | 0.610611 |
Target: 5'- gACCGCGacguGGCGCugugGCuuGuGCGCGAGu -3' miRNA: 3'- gUGGCGU----UCGUGuua-CGu-C-CGCGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 35668 | 0.67 | 0.610611 |
Target: 5'- gACCGCGGGCGguGgcugaGCGGGCacguGUGGGg -3' miRNA: 3'- gUGGCGUUCGUguUa----CGUCCG----CGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 47930 | 0.67 | 0.610611 |
Target: 5'- gGCgGCAGGCAUGggcacgacgccGUGUGGGcCGCGAa -3' miRNA: 3'- gUGgCGUUCGUGU-----------UACGUCC-GCGCUc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 33749 | 0.67 | 0.610611 |
Target: 5'- gCACCccgGCAAGgGCAAcgGCGGcGCcGCGAGc -3' miRNA: 3'- -GUGG---CGUUCgUGUUa-CGUC-CG-CGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 22070 | 0.66 | 0.621762 |
Target: 5'- gCACCGUuGGCgACGGcgGUAGcGCGUGGGg -3' miRNA: 3'- -GUGGCGuUCG-UGUUa-CGUC-CGCGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 43763 | 0.66 | 0.621762 |
Target: 5'- uGCUGUugauGAGCACcuucAUGCGGGCGCc-- -3' miRNA: 3'- gUGGCG----UUCGUGu---UACGUCCGCGcuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 27176 | 0.66 | 0.621762 |
Target: 5'- uGCUGCcccucGGCgu-GUGguGGCGCGAGc -3' miRNA: 3'- gUGGCGu----UCGuguUACguCCGCGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 39696 | 0.66 | 0.632922 |
Target: 5'- gUugCGC-AGCGacGUGCGGGCGCu-- -3' miRNA: 3'- -GugGCGuUCGUguUACGUCCGCGcuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 15982 | 0.66 | 0.632922 |
Target: 5'- aCGCC-CAGGCGCuc-GCAgacGGCGuCGAGg -3' miRNA: 3'- -GUGGcGUUCGUGuuaCGU---CCGC-GCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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