miRNA display CGI


Results 61 - 80 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12802 5' -55.6 NC_003387.1 + 14646 0.67 0.555327
Target:  5'- gGCCGCcgcGCACAGUGaCGcGGCGCu-- -3'
miRNA:   3'- gUGGCGuu-CGUGUUAC-GU-CCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 24444 0.68 0.544425
Target:  5'- gGCCGCAcuaucAGCcgACGA-GCA-GCGCGAGg -3'
miRNA:   3'- gUGGCGU-----UCG--UGUUaCGUcCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 43625 0.68 0.544425
Target:  5'- uGCC-CGAGCGCGA-GCGGGU-CGAGg -3'
miRNA:   3'- gUGGcGUUCGUGUUaCGUCCGcGCUC- -5'
12802 5' -55.6 NC_003387.1 + 32454 0.68 0.522841
Target:  5'- -cCCGCAgugccuAGCGCcAUGCGGGCGUu-- -3'
miRNA:   3'- guGGCGU------UCGUGuUACGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 43898 0.68 0.522841
Target:  5'- aGCCGCucgucgauAGGC-CAAguuCGGGCGCGAGc -3'
miRNA:   3'- gUGGCG--------UUCGuGUUac-GUCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 43068 0.68 0.522841
Target:  5'- gCACCGCcccgagggcuGGCACAccaggGUGaCGGGCGcCGGGu -3'
miRNA:   3'- -GUGGCGu---------UCGUGU-----UAC-GUCCGC-GCUC- -5'
12802 5' -55.6 NC_003387.1 + 45221 0.68 0.522841
Target:  5'- gGCCGCAgacucgucacccAGCG-GGUGCGGGUGCGcGg -3'
miRNA:   3'- gUGGCGU------------UCGUgUUACGUCCGCGCuC- -5'
12802 5' -55.6 NC_003387.1 + 11935 0.68 0.512173
Target:  5'- gGCUGCGAGCGCGGgaucuugGUcgAGGCGCa-- -3'
miRNA:   3'- gUGGCGUUCGUGUUa------CG--UCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 52596 0.68 0.512173
Target:  5'- gAUCGCGAGgGCGAccgcaucgagGCGGGCGCGc- -3'
miRNA:   3'- gUGGCGUUCgUGUUa---------CGUCCGCGCuc -5'
12802 5' -55.6 NC_003387.1 + 32197 0.68 0.512173
Target:  5'- aCACCGCAGGg-----GCAGGCGCa-- -3'
miRNA:   3'- -GUGGCGUUCguguuaCGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 34696 0.68 0.512173
Target:  5'- aCGCCGUggGCcugguAC-AUGC-GGCGCGAc -3'
miRNA:   3'- -GUGGCGuuCG-----UGuUACGuCCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 10918 0.68 0.512173
Target:  5'- gCGCUGCAGGaCAUggUcGCgcaGGGCGCGGu -3'
miRNA:   3'- -GUGGCGUUC-GUGuuA-CG---UCCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 2899 0.68 0.501595
Target:  5'- uCGCuCGcCGGGCGCg--GCAGGCcGCGGGc -3'
miRNA:   3'- -GUG-GC-GUUCGUGuuaCGUCCG-CGCUC- -5'
12802 5' -55.6 NC_003387.1 + 35937 0.68 0.501595
Target:  5'- gCAUCGCcAGCGCAcuccaaaaGUGCugcgcGGUGCGGGu -3'
miRNA:   3'- -GUGGCGuUCGUGU--------UACGu----CCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 14933 0.68 0.501595
Target:  5'- gACCGCGGGUGCugcgccCAGGCGCGc- -3'
miRNA:   3'- gUGGCGUUCGUGuuac--GUCCGCGCuc -5'
12802 5' -55.6 NC_003387.1 + 22411 0.68 0.501595
Target:  5'- gCGCCGCcAGCccuggUAAUGCgcgucgucccAGGCGCGGGc -3'
miRNA:   3'- -GUGGCGuUCGu----GUUACG----------UCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 18523 0.69 0.495295
Target:  5'- cCGCCGCGguGGCACGcaggcguucgcgaacAcGCAGGCGUGuGc -3'
miRNA:   3'- -GUGGCGU--UCGUGU---------------UaCGUCCGCGCuC- -5'
12802 5' -55.6 NC_003387.1 + 15094 0.69 0.491114
Target:  5'- uCACUGCGgcGGCgauuaccucgGCAGUGC-GGUGCGGGu -3'
miRNA:   3'- -GUGGCGU--UCG----------UGUUACGuCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 28780 0.69 0.491114
Target:  5'- uGCUGCAgcaugggcacuGGCACAccGC-GGCGUGGGa -3'
miRNA:   3'- gUGGCGU-----------UCGUGUuaCGuCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 46599 0.69 0.491114
Target:  5'- -gUCGCcAGCACcg-GCAGGUGCGuGg -3'
miRNA:   3'- guGGCGuUCGUGuuaCGUCCGCGCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.