miRNA display CGI


Results 81 - 100 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12802 5' -55.6 NC_003387.1 + 35272 0.66 0.677451
Target:  5'- gCGCCGCGGGUACGA--CuGGCGCc-- -3'
miRNA:   3'- -GUGGCGUUCGUGUUacGuCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 35301 0.66 0.653002
Target:  5'- uCGCCGCAcugaaucGGCaccugugGCAGUGguGG-GCGGGc -3'
miRNA:   3'- -GUGGCGU-------UCG-------UGUUACguCCgCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 35407 0.67 0.57731
Target:  5'- cCACCGCAGGUcaGCGGUGUgauuGGCG-GAu -3'
miRNA:   3'- -GUGGCGUUCG--UGUUACGu---CCGCgCUc -5'
12802 5' -55.6 NC_003387.1 + 35668 0.67 0.610611
Target:  5'- gACCGCGGGCGguGgcugaGCGGGCacguGUGGGg -3'
miRNA:   3'- gUGGCGUUCGUguUa----CGUCCG----CGCUC- -5'
12802 5' -55.6 NC_003387.1 + 35937 0.68 0.501595
Target:  5'- gCAUCGCcAGCGCAcuccaaaaGUGCugcgcGGUGCGGGu -3'
miRNA:   3'- -GUGGCGuUCGUGU--------UACGu----CCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 36765 1.08 0.000878
Target:  5'- cCACCGCAAGCACAAUGCAGGCGCGAGu -3'
miRNA:   3'- -GUGGCGUUCGUGUUACGUCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 36965 0.66 0.664134
Target:  5'- aACCGCAGGCuguACGccccgaucAUGCugcggcugauccGGCGCGGGu -3'
miRNA:   3'- gUGGCGUUCG---UGU--------UACGu-----------CCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 37135 0.66 0.642967
Target:  5'- gGCCGUgaugguuGGGCACucgcuggGCGGGCGCa-- -3'
miRNA:   3'- gUGGCG-------UUCGUGuua----CGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 37317 0.67 0.57731
Target:  5'- cCACCGCcAGUuacgcCGGUGCGGGUaCGGGu -3'
miRNA:   3'- -GUGGCGuUCGu----GUUACGUCCGcGCUC- -5'
12802 5' -55.6 NC_003387.1 + 37414 0.7 0.401965
Target:  5'- uCGCCGCGcAGCACAAUGUcgccGGUGCcGGu -3'
miRNA:   3'- -GUGGCGU-UCGUGUUACGu---CCGCGcUC- -5'
12802 5' -55.6 NC_003387.1 + 38201 0.69 0.470466
Target:  5'- gGCCGcCGAGUACcgcacGCAGGCGCa-- -3'
miRNA:   3'- gUGGC-GUUCGUGuua--CGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 39436 0.72 0.323793
Target:  5'- gCGCCGCAAGCucgguaucGCGAaccuguacgaGCGGGCGCGGu -3'
miRNA:   3'- -GUGGCGUUCG--------UGUUa---------CGUCCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 39696 0.66 0.632922
Target:  5'- gUugCGC-AGCGacGUGCGGGCGCu-- -3'
miRNA:   3'- -GugGCGuUCGUguUACGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 40453 0.67 0.599479
Target:  5'- gGCCGCcGGuCGC----CAGGCGCGGGa -3'
miRNA:   3'- gUGGCGuUC-GUGuuacGUCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 40605 0.67 0.57731
Target:  5'- aCACCGCAuuucgaGGCGgGccGguGGCGUGGu -3'
miRNA:   3'- -GUGGCGU------UCGUgUuaCguCCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 40708 0.66 0.655231
Target:  5'- aCACCGCAuGCGCcGUGUcgaccAGGcCGCGc- -3'
miRNA:   3'- -GUGGCGUuCGUGuUACG-----UCC-GCGCuc -5'
12802 5' -55.6 NC_003387.1 + 40986 0.67 0.610611
Target:  5'- aAgCGCAAGCAUggUGCcugaucGGCGuCGAc -3'
miRNA:   3'- gUgGCGUUCGUGuuACGu-----CCGC-GCUc -5'
12802 5' -55.6 NC_003387.1 + 41101 0.66 0.644082
Target:  5'- aGCCGCGAGC----UGCuGGCGCu-- -3'
miRNA:   3'- gUGGCGUUCGuguuACGuCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 41175 0.69 0.450269
Target:  5'- cCACCGCAgucAGCACGGccUGguG-CGCGAa -3'
miRNA:   3'- -GUGGCGU---UCGUGUU--ACguCcGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 41226 0.66 0.666357
Target:  5'- gCACgGCAAcucCGCGGUGCAuGGCgGCGAc -3'
miRNA:   3'- -GUGgCGUUc--GUGUUACGU-CCG-CGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.