Results 81 - 100 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 21209 | 0.7 | 0.430558 |
Target: 5'- gGCCGCGuggaACAgcGUGCGGGCGCaGGGc -3' miRNA: 3'- gUGGCGUucg-UGU--UACGUCCGCG-CUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 19888 | 0.66 | 0.666357 |
Target: 5'- aACCGCcccGCcccGCGGUGCGGGCuGCGc- -3' miRNA: 3'- gUGGCGuu-CG---UGUUACGUCCG-CGCuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 19486 | 0.7 | 0.391788 |
Target: 5'- cCACCGCGGGCGacGUGUgguucaaGGGCGUGGa -3' miRNA: 3'- -GUGGCGUUCGUguUACG-------UCCGCGCUc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 19451 | 0.73 | 0.264301 |
Target: 5'- gGCCGUgcGGGCGCGugucaGUGUGGGCGcCGAGg -3' miRNA: 3'- gUGGCG--UUCGUGU-----UACGUCCGC-GCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 19273 | 0.73 | 0.278293 |
Target: 5'- gGCCGCcuuGCGCGagGUGguGGCGCGcAGc -3' miRNA: 3'- gUGGCGuu-CGUGU--UACguCCGCGC-UC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 18523 | 0.69 | 0.495295 |
Target: 5'- cCGCCGCGguGGCACGcaggcguucgcgaacAcGCAGGCGUGuGc -3' miRNA: 3'- -GUGGCGU--UCGUGU---------------UaCGUCCGCGCuC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 18522 | 0.67 | 0.610611 |
Target: 5'- gACCGCGacguGGCGCugugGCuuGuGCGCGAGu -3' miRNA: 3'- gUGGCGU----UCGUGuua-CGu-C-CGCGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 17123 | 0.66 | 0.659684 |
Target: 5'- gGCCGUAGGCGaucgcuGUGUcgaccagcucggccaGGGCGcCGAGg -3' miRNA: 3'- gUGGCGUUCGUgu----UACG---------------UCCGC-GCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 15982 | 0.66 | 0.632922 |
Target: 5'- aCGCC-CAGGCGCuc-GCAgacGGCGuCGAGg -3' miRNA: 3'- -GUGGcGUUCGUGuuaCGU---CCGC-GCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 15438 | 0.67 | 0.566291 |
Target: 5'- gCGCCGaCGAGCGCGc--CAGGCGCc-- -3' miRNA: 3'- -GUGGC-GUUCGUGUuacGUCCGCGcuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 15375 | 0.67 | 0.566291 |
Target: 5'- uGCCGCAgauAGCGCAGcccGC-GGCGgGGGc -3' miRNA: 3'- gUGGCGU---UCGUGUUa--CGuCCGCgCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 15094 | 0.69 | 0.491114 |
Target: 5'- uCACUGCGgcGGCgauuaccucgGCAGUGC-GGUGCGGGu -3' miRNA: 3'- -GUGGCGU--UCG----------UGUUACGuCCGCGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 14933 | 0.68 | 0.501595 |
Target: 5'- gACCGCGGGUGCugcgccCAGGCGCGc- -3' miRNA: 3'- gUGGCGUUCGUGuuac--GUCCGCGCuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 14646 | 0.67 | 0.555327 |
Target: 5'- gGCCGCcgcGCACAGUGaCGcGGCGCu-- -3' miRNA: 3'- gUGGCGuu-CGUGUUAC-GU-CCGCGcuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 14162 | 0.67 | 0.566291 |
Target: 5'- gCACCucgcCGGGC-CGGgccGCGGGCGUGAGg -3' miRNA: 3'- -GUGGc---GUUCGuGUUa--CGUCCGCGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 14091 | 0.67 | 0.57731 |
Target: 5'- aACUGCAgcgccAGCGCGGccUGCGGGC-CGAa -3' miRNA: 3'- gUGGCGU-----UCGUGUU--ACGUCCGcGCUc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 13158 | 0.66 | 0.666357 |
Target: 5'- gCACCGCGuGCAgAagGCcGaGCGCGAc -3' miRNA: 3'- -GUGGCGUuCGUgUuaCGuC-CGCGCUc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 11935 | 0.68 | 0.512173 |
Target: 5'- gGCUGCGAGCGCGGgaucuugGUcgAGGCGCa-- -3' miRNA: 3'- gUGGCGUUCGUGUUa------CG--UCCGCGcuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 11195 | 0.71 | 0.348541 |
Target: 5'- gGCCaaGGGCAUgucggacaaGAUGCAGGCGUGGGc -3' miRNA: 3'- gUGGcgUUCGUG---------UUACGUCCGCGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 11086 | 0.67 | 0.588375 |
Target: 5'- gUACCGC-AGCGCcuuaGCuuGGGCGCGGu -3' miRNA: 3'- -GUGGCGuUCGUGuua-CG--UCCGCGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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