miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12802 5' -55.6 NC_003387.1 + 27972 0.7 0.392706
Target:  5'- gACCGCGagaAGCACug-GCAGGUGCc-- -3'
miRNA:   3'- gUGGCGU---UCGUGuuaCGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 457 0.71 0.374608
Target:  5'- cCGCCGCGgcGGC-CGAcgGCGaccGGCGCGAGc -3'
miRNA:   3'- -GUGGCGU--UCGuGUUa-CGU---CCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 26283 0.72 0.308034
Target:  5'- gACCGCAAcGuCGCAAUGCucGGCGUGGc -3'
miRNA:   3'- gUGGCGUU-C-GUGUUACGu-CCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 33188 0.74 0.225741
Target:  5'- cCGCCGCAugcggaucGCGCAGcGCAaGCGCGAGg -3'
miRNA:   3'- -GUGGCGUu-------CGUGUUaCGUcCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 34696 0.68 0.512173
Target:  5'- aCGCCGUggGCcugguAC-AUGC-GGCGCGAc -3'
miRNA:   3'- -GUGGCGuuCG-----UGuUACGuCCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 26789 0.69 0.460309
Target:  5'- gCACCGC-AGC-C-AUGUGGGUGUGGGg -3'
miRNA:   3'- -GUGGCGuUCGuGuUACGUCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 32206 0.71 0.357084
Target:  5'- uCACCGaCGAGCGCGAcGCcgcgcuGCGCGAGc -3'
miRNA:   3'- -GUGGC-GUUCGUGUUaCGuc----CGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 46955 0.75 0.218041
Target:  5'- cCGCgGCGAGCGCGgccgguuccgcuacAUGCGGGCGaCGAc -3'
miRNA:   3'- -GUGgCGUUCGUGU--------------UACGUCCGC-GCUc -5'
12802 5' -55.6 NC_003387.1 + 5018 0.69 0.460309
Target:  5'- gCACgGCAGGCucACGAggGCGGcgcuGCGCGAGu -3'
miRNA:   3'- -GUGgCGUUCG--UGUUa-CGUC----CGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 9424 0.78 0.119552
Target:  5'- gGCCGaCGAGUACGAcGCGGGCGcCGAGc -3'
miRNA:   3'- gUGGC-GUUCGUGUUaCGUCCGC-GCUC- -5'
12802 5' -55.6 NC_003387.1 + 32266 0.71 0.374608
Target:  5'- uCGCCG-AGGCcgACAaggcGUGgGGGCGCGAGg -3'
miRNA:   3'- -GUGGCgUUCG--UGU----UACgUCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 30629 0.7 0.401965
Target:  5'- cCugCGCAAGCACAA-----GCGCGAGa -3'
miRNA:   3'- -GugGCGUUCGUGUUacgucCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 52666 0.72 0.323793
Target:  5'- gCGCCGauCGAGCGCGuuuGUGCAGGUcaGCGAc -3'
miRNA:   3'- -GUGGC--GUUCGUGU---UACGUCCG--CGCUc -5'
12802 5' -55.6 NC_003387.1 + 29310 0.72 0.308034
Target:  5'- gACCGCGGGCACGAgcgcCAGGcCGCGc- -3'
miRNA:   3'- gUGGCGUUCGUGUUac--GUCC-GCGCuc -5'
12802 5' -55.6 NC_003387.1 + 19451 0.73 0.264301
Target:  5'- gGCCGUgcGGGCGCGugucaGUGUGGGCGcCGAGg -3'
miRNA:   3'- gUGGCG--UUCGUGU-----UACGUCCGC-GCUC- -5'
12802 5' -55.6 NC_003387.1 + 28874 0.74 0.250885
Target:  5'- gUACCGCGAGCgGCAcgGCGccgagucccGGCGCGGc -3'
miRNA:   3'- -GUGGCGUUCG-UGUuaCGU---------CCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 43625 0.68 0.544425
Target:  5'- uGCC-CGAGCGCGA-GCGGGU-CGAGg -3'
miRNA:   3'- gUGGcGUUCGUGUUaCGUCCGcGCUC- -5'
12802 5' -55.6 NC_003387.1 + 43068 0.68 0.522841
Target:  5'- gCACCGCcccgagggcuGGCACAccaggGUGaCGGGCGcCGGGu -3'
miRNA:   3'- -GUGGCGu---------UCGUGU-----UAC-GUCCGC-GCUC- -5'
12802 5' -55.6 NC_003387.1 + 41940 0.69 0.480736
Target:  5'- aCGCCGaCGAcCcgACGAUGCAGGCcgccaGCGAGg -3'
miRNA:   3'- -GUGGC-GUUcG--UGUUACGUCCG-----CGCUC- -5'
12802 5' -55.6 NC_003387.1 + 38201 0.69 0.470466
Target:  5'- gGCCGcCGAGUACcgcacGCAGGCGCa-- -3'
miRNA:   3'- gUGGC-GUUCGUGuua--CGUCCGCGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.