miRNA display CGI


Results 81 - 100 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12802 5' -55.6 NC_003387.1 + 43763 0.66 0.621762
Target:  5'- uGCUGUugauGAGCACcuucAUGCGGGCGCc-- -3'
miRNA:   3'- gUGGCG----UUCGUGu---UACGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 39696 0.66 0.632922
Target:  5'- gUugCGC-AGCGacGUGCGGGCGCu-- -3'
miRNA:   3'- -GugGCGuUCGUguUACGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 33546 0.66 0.666357
Target:  5'- uGCCGUuAGCgACcGUGCGGGcCGCGc- -3'
miRNA:   3'- gUGGCGuUCG-UGuUACGUCC-GCGCuc -5'
12802 5' -55.6 NC_003387.1 + 22411 0.68 0.501595
Target:  5'- gCGCCGCcAGCccuggUAAUGCgcgucgucccAGGCGCGGGc -3'
miRNA:   3'- -GUGGCGuUCGu----GUUACG----------UCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 9013 0.74 0.225741
Target:  5'- cCGCCGuCGAGCACcugGCGGGCGCc-- -3'
miRNA:   3'- -GUGGC-GUUCGUGuuaCGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 4626 0.73 0.271224
Target:  5'- cCACCGCGGGCGCAGcgGCAGcGCcacccguCGAGg -3'
miRNA:   3'- -GUGGCGUUCGUGUUa-CGUC-CGc------GCUC- -5'
12802 5' -55.6 NC_003387.1 + 19273 0.73 0.278293
Target:  5'- gGCCGCcuuGCGCGagGUGguGGCGCGcAGc -3'
miRNA:   3'- gUGGCGuu-CGUGU--UACguCCGCGC-UC- -5'
12802 5' -55.6 NC_003387.1 + 8446 0.7 0.401965
Target:  5'- aCACgGCGAGC-CAccGCGcGGCGCGGu -3'
miRNA:   3'- -GUGgCGUUCGuGUuaCGU-CCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 37414 0.7 0.401965
Target:  5'- uCGCCGCGcAGCACAAUGUcgccGGUGCcGGu -3'
miRNA:   3'- -GUGGCGU-UCGUGUUACGu---CCGCGcUC- -5'
12802 5' -55.6 NC_003387.1 + 52312 0.77 0.158406
Target:  5'- cCACCGCcAGCACAGccucGgGGGUGCGAGu -3'
miRNA:   3'- -GUGGCGuUCGUGUUa---CgUCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 36765 1.08 0.000878
Target:  5'- cCACCGCAAGCACAAUGCAGGCGCGAGu -3'
miRNA:   3'- -GUGGCGUUCGUGUUACGUCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 35937 0.68 0.501595
Target:  5'- gCAUCGCcAGCGCAcuccaaaaGUGCugcgcGGUGCGGGu -3'
miRNA:   3'- -GUGGCGuUCGUGU--------UACGu----CCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 11935 0.68 0.512173
Target:  5'- gGCUGCGAGCGCGGgaucuugGUcgAGGCGCa-- -3'
miRNA:   3'- gUGGCGUUCGUGUUa------CG--UCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 32197 0.68 0.512173
Target:  5'- aCACCGCAGGg-----GCAGGCGCa-- -3'
miRNA:   3'- -GUGGCGUUCguguuaCGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 52596 0.68 0.512173
Target:  5'- gAUCGCGAGgGCGAccgcaucgagGCGGGCGCGc- -3'
miRNA:   3'- gUGGCGUUCgUGUUa---------CGUCCGCGCuc -5'
12802 5' -55.6 NC_003387.1 + 45221 0.68 0.522841
Target:  5'- gGCCGCAgacucgucacccAGCG-GGUGCGGGUGCGcGg -3'
miRNA:   3'- gUGGCGU------------UCGUgUUACGUCCGCGCuC- -5'
12802 5' -55.6 NC_003387.1 + 14646 0.67 0.555327
Target:  5'- gGCCGCcgcGCACAGUGaCGcGGCGCu-- -3'
miRNA:   3'- gUGGCGuu-CGUGUUAC-GU-CCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 15375 0.67 0.566291
Target:  5'- uGCCGCAgauAGCGCAGcccGC-GGCGgGGGc -3'
miRNA:   3'- gUGGCGU---UCGUGUUa--CGuCCGCgCUC- -5'
12802 5' -55.6 NC_003387.1 + 15438 0.67 0.566291
Target:  5'- gCGCCGaCGAGCGCGc--CAGGCGCc-- -3'
miRNA:   3'- -GUGGC-GUUCGUGUuacGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 14091 0.67 0.57731
Target:  5'- aACUGCAgcgccAGCGCGGccUGCGGGC-CGAa -3'
miRNA:   3'- gUGGCGU-----UCGUGUU--ACGUCCGcGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.