miRNA display CGI


Results 101 - 120 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12802 5' -55.6 NC_003387.1 + 27260 0.7 0.401965
Target:  5'- gCGCCGCAugAGcCGCGAcGCGGGCagcgcgcccuGCGAGu -3'
miRNA:   3'- -GUGGCGU--UC-GUGUUaCGUCCG----------CGCUC- -5'
12802 5' -55.6 NC_003387.1 + 37414 0.7 0.401965
Target:  5'- uCGCCGCGcAGCACAAUGUcgccGGUGCcGGu -3'
miRNA:   3'- -GUGGCGU-UCGUGUUACGu---CCGCGcUC- -5'
12802 5' -55.6 NC_003387.1 + 8446 0.7 0.401965
Target:  5'- aCACgGCGAGC-CAccGCGcGGCGCGGu -3'
miRNA:   3'- -GUGgCGUUCGuGUuaCGU-CCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 19273 0.73 0.278293
Target:  5'- gGCCGCcuuGCGCGagGUGguGGCGCGcAGc -3'
miRNA:   3'- gUGGCGuu-CGUGU--UACguCCGCGC-UC- -5'
12802 5' -55.6 NC_003387.1 + 4626 0.73 0.271224
Target:  5'- cCACCGCGGGCGCAGcgGCAGcGCcacccguCGAGg -3'
miRNA:   3'- -GUGGCGUUCGUGUUa-CGUC-CGc------GCUC- -5'
12802 5' -55.6 NC_003387.1 + 9013 0.74 0.225741
Target:  5'- cCGCCGuCGAGCACcugGCGGGCGCc-- -3'
miRNA:   3'- -GUGGC-GUUCGUGuuaCGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 3812 0.76 0.174031
Target:  5'- aCACCGCAAGCGCGAcaacgaucgucaggGC-GGCGCGGu -3'
miRNA:   3'- -GUGGCGUUCGUGUUa-------------CGuCCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 52312 0.77 0.158406
Target:  5'- cCACCGCcAGCACAGccucGgGGGUGCGAGu -3'
miRNA:   3'- -GUGGCGuUCGUGUUa---CgUCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 41175 0.69 0.450269
Target:  5'- cCACCGCAgucAGCACGGccUGguG-CGCGAa -3'
miRNA:   3'- -GUGGCGU---UCGUGUU--ACguCcGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 4528 0.69 0.450269
Target:  5'- cCGCCGCc-GC-CGGUGCGGGCaccuuGCGGGc -3'
miRNA:   3'- -GUGGCGuuCGuGUUACGUCCG-----CGCUC- -5'
12802 5' -55.6 NC_003387.1 + 52596 0.68 0.512173
Target:  5'- gAUCGCGAGgGCGAccgcaucgagGCGGGCGCGc- -3'
miRNA:   3'- gUGGCGUUCgUGUUa---------CGUCCGCGCuc -5'
12802 5' -55.6 NC_003387.1 + 32197 0.68 0.512173
Target:  5'- aCACCGCAGGg-----GCAGGCGCa-- -3'
miRNA:   3'- -GUGGCGUUCguguuaCGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 11935 0.68 0.512173
Target:  5'- gGCUGCGAGCGCGGgaucuugGUcgAGGCGCa-- -3'
miRNA:   3'- gUGGCGUUCGUGUUa------CG--UCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 35937 0.68 0.501595
Target:  5'- gCAUCGCcAGCGCAcuccaaaaGUGCugcgcGGUGCGGGu -3'
miRNA:   3'- -GUGGCGuUCGUGU--------UACGu----CCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 2899 0.68 0.501595
Target:  5'- uCGCuCGcCGGGCGCg--GCAGGCcGCGGGc -3'
miRNA:   3'- -GUG-GC-GUUCGUGuuaCGUCCG-CGCUC- -5'
12802 5' -55.6 NC_003387.1 + 18523 0.69 0.495295
Target:  5'- cCGCCGCGguGGCACGcaggcguucgcgaacAcGCAGGCGUGuGc -3'
miRNA:   3'- -GUGGCGU--UCGUGU---------------UaCGUCCGCGCuC- -5'
12802 5' -55.6 NC_003387.1 + 15094 0.69 0.491114
Target:  5'- uCACUGCGgcGGCgauuaccucgGCAGUGC-GGUGCGGGu -3'
miRNA:   3'- -GUGGCGU--UCG----------UGUUACGuCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 46599 0.69 0.491114
Target:  5'- -gUCGCcAGCACcg-GCAGGUGCGuGg -3'
miRNA:   3'- guGGCGuUCGUGuuaCGUCCGCGCuC- -5'
12802 5' -55.6 NC_003387.1 + 3564 0.69 0.477644
Target:  5'- gACCGCcuGCGCGcugguGUGCaccgacacguguacAGGCGCGAc -3'
miRNA:   3'- gUGGCGuuCGUGU-----UACG--------------UCCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 31961 0.69 0.470466
Target:  5'- gGCCGac-GCGCcuUGCAGGCGCa-- -3'
miRNA:   3'- gUGGCguuCGUGuuACGUCCGCGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.