miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12802 5' -55.6 NC_003387.1 + 4005 0.66 0.648543
Target:  5'- -gUCGCGGcGCACGGUGCucgacaacgccaaGCGCGAGg -3'
miRNA:   3'- guGGCGUU-CGUGUUACGuc-----------CGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 47968 0.66 0.644082
Target:  5'- gCACCGCGAGCugGGcgGCAacggcaaacGGUGCuucGAGc -3'
miRNA:   3'- -GUGGCGUUCGugUUa-CGU---------CCGCG---CUC- -5'
12802 5' -55.6 NC_003387.1 + 41101 0.66 0.644082
Target:  5'- aGCCGCGAGC----UGCuGGCGCu-- -3'
miRNA:   3'- gUGGCGUUCGuguuACGuCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 27892 0.66 0.644082
Target:  5'- gGCCGCAgacAGCGCAcacGCGgccuugaccggcGGCGUGGGc -3'
miRNA:   3'- gUGGCGU---UCGUGUua-CGU------------CCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 10036 0.66 0.644082
Target:  5'- aGCCG-AAGCGCGccGaGGGCGCGGu -3'
miRNA:   3'- gUGGCgUUCGUGUuaCgUCCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 48023 0.66 0.644082
Target:  5'- gCGCCGUGgaucGGCAC-GUGCGGGCaCGGc -3'
miRNA:   3'- -GUGGCGU----UCGUGuUACGUCCGcGCUc -5'
12802 5' -55.6 NC_003387.1 + 37135 0.66 0.642967
Target:  5'- gGCCGUgaugguuGGGCACucgcuggGCGGGCGCa-- -3'
miRNA:   3'- gUGGCG-------UUCGUGuua----CGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 39696 0.66 0.632922
Target:  5'- gUugCGC-AGCGacGUGCGGGCGCu-- -3'
miRNA:   3'- -GugGCGuUCGUguUACGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 15982 0.66 0.632922
Target:  5'- aCGCC-CAGGCGCuc-GCAgacGGCGuCGAGg -3'
miRNA:   3'- -GUGGcGUUCGUGuuaCGU---CCGC-GCUC- -5'
12802 5' -55.6 NC_003387.1 + 27176 0.66 0.621762
Target:  5'- uGCUGCcccucGGCgu-GUGguGGCGCGAGc -3'
miRNA:   3'- gUGGCGu----UCGuguUACguCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 22070 0.66 0.621762
Target:  5'- gCACCGUuGGCgACGGcgGUAGcGCGUGGGg -3'
miRNA:   3'- -GUGGCGuUCG-UGUUa-CGUC-CGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 43763 0.66 0.621762
Target:  5'- uGCUGUugauGAGCACcuucAUGCGGGCGCc-- -3'
miRNA:   3'- gUGGCG----UUCGUGu---UACGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 46364 0.67 0.610611
Target:  5'- gGCCGaggcCAAGCGCGAcacgGUGGGCGCa-- -3'
miRNA:   3'- gUGGC----GUUCGUGUUa---CGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 40986 0.67 0.610611
Target:  5'- aAgCGCAAGCAUggUGCcugaucGGCGuCGAc -3'
miRNA:   3'- gUgGCGUUCGUGuuACGu-----CCGC-GCUc -5'
12802 5' -55.6 NC_003387.1 + 35668 0.67 0.610611
Target:  5'- gACCGCGGGCGguGgcugaGCGGGCacguGUGGGg -3'
miRNA:   3'- gUGGCGUUCGUguUa----CGUCCG----CGCUC- -5'
12802 5' -55.6 NC_003387.1 + 33749 0.67 0.610611
Target:  5'- gCACCccgGCAAGgGCAAcgGCGGcGCcGCGAGc -3'
miRNA:   3'- -GUGG---CGUUCgUGUUa-CGUC-CG-CGCUC- -5'
12802 5' -55.6 NC_003387.1 + 5412 0.67 0.610611
Target:  5'- aCGCCGCAAGCguuGCAGccUGC-GGCGUu-- -3'
miRNA:   3'- -GUGGCGUUCG---UGUU--ACGuCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 47930 0.67 0.610611
Target:  5'- gGCgGCAGGCAUGggcacgacgccGUGUGGGcCGCGAa -3'
miRNA:   3'- gUGgCGUUCGUGU-----------UACGUCC-GCGCUc -5'
12802 5' -55.6 NC_003387.1 + 47307 0.67 0.610611
Target:  5'- aCGCCGCAGGCuGCAAcgcuUGC-GGCGUu-- -3'
miRNA:   3'- -GUGGCGUUCG-UGUU----ACGuCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 52219 0.67 0.610611
Target:  5'- aACCGCGGuCGCcacGCGGGCGCGc- -3'
miRNA:   3'- gUGGCGUUcGUGuuaCGUCCGCGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.