miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12804 5' -55.6 NC_003387.1 + 11064 0.67 0.713919
Target:  5'- aCCACa-GGUCGCaGUCgUCGACGuACc -3'
miRNA:   3'- gGGUGagCUAGCG-CAGgAGCUGC-UGc -5'
12804 5' -55.6 NC_003387.1 + 29856 0.67 0.713919
Target:  5'- cCCCugUCGAUU-CGUCggCGAgGGCGc -3'
miRNA:   3'- -GGGugAGCUAGcGCAGgaGCUgCUGC- -5'
12804 5' -55.6 NC_003387.1 + 22451 0.67 0.713919
Target:  5'- gCCGCggCGuuggccUCGCGguaCUCGACGACc -3'
miRNA:   3'- gGGUGa-GCu-----AGCGCag-GAGCUGCUGc -5'
12804 5' -55.6 NC_003387.1 + 7554 0.67 0.707636
Target:  5'- gCCCugGC-CGAUCGCGUCaucacugaguacaCGAUGGCGa -3'
miRNA:   3'- -GGG--UGaGCUAGCGCAGga-----------GCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 530 0.67 0.703433
Target:  5'- gCCUGCUCGAcaGCGUCCugcUCGAccugcuCGACa -3'
miRNA:   3'- -GGGUGAGCUagCGCAGG---AGCU------GCUGc -5'
12804 5' -55.6 NC_003387.1 + 40012 0.67 0.692881
Target:  5'- gCCGC-CaGAUCGUGUaCUCGACGcCGa -3'
miRNA:   3'- gGGUGaG-CUAGCGCAgGAGCUGCuGC- -5'
12804 5' -55.6 NC_003387.1 + 1447 0.67 0.692881
Target:  5'- --gGCUCGGggUCGuCGUCCUCGuCGAgGu -3'
miRNA:   3'- gggUGAGCU--AGC-GCAGGAGCuGCUgC- -5'
12804 5' -55.6 NC_003387.1 + 16755 0.67 0.682273
Target:  5'- gCCGC-CGAggGCcUCCUCGACcGCGg -3'
miRNA:   3'- gGGUGaGCUagCGcAGGAGCUGcUGC- -5'
12804 5' -55.6 NC_003387.1 + 40287 0.67 0.682273
Target:  5'- aCCC-CUCGAUCGaGga--CGACGACGg -3'
miRNA:   3'- -GGGuGAGCUAGCgCaggaGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 10750 0.67 0.682273
Target:  5'- aCCGCUgacacggccgCGAUCGcCGguacgagCCUCGACGAa- -3'
miRNA:   3'- gGGUGA----------GCUAGC-GCa------GGAGCUGCUgc -5'
12804 5' -55.6 NC_003387.1 + 39652 0.67 0.682273
Target:  5'- gCCUugUCGAgCGCGuacugcuugUCCUCGAuagccuuguCGGCGu -3'
miRNA:   3'- -GGGugAGCUaGCGC---------AGGAGCU---------GCUGC- -5'
12804 5' -55.6 NC_003387.1 + 22514 0.67 0.682273
Target:  5'- gCgCGCUCGAcgUCgGCGUaccggCUCGGCGACu -3'
miRNA:   3'- -GgGUGAGCU--AG-CGCAg----GAGCUGCUGc -5'
12804 5' -55.6 NC_003387.1 + 23258 0.67 0.67162
Target:  5'- cCCUGCUCGcuggCGcCGUUCUCGAUcGCGa -3'
miRNA:   3'- -GGGUGAGCua--GC-GCAGGAGCUGcUGC- -5'
12804 5' -55.6 NC_003387.1 + 16082 0.67 0.67162
Target:  5'- gCCACUCGGggGCGcCgUCGggcaucGCGGCGg -3'
miRNA:   3'- gGGUGAGCUagCGCaGgAGC------UGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 41051 0.67 0.67162
Target:  5'- aCCCACgCGAUCGCcgaggCCgcugUCGACG-CGa -3'
miRNA:   3'- -GGGUGaGCUAGCGca---GG----AGCUGCuGC- -5'
12804 5' -55.6 NC_003387.1 + 45746 0.67 0.67162
Target:  5'- gUCCAgUUG-UCGuCGcCCUCGACGAgGg -3'
miRNA:   3'- -GGGUgAGCuAGC-GCaGGAGCUGCUgC- -5'
12804 5' -55.6 NC_003387.1 + 47848 0.67 0.670552
Target:  5'- gCCugUCGAaacCGCuuauggcgcagcgGUCCUaCGACGACa -3'
miRNA:   3'- gGGugAGCUa--GCG-------------CAGGA-GCUGCUGc -5'
12804 5' -55.6 NC_003387.1 + 33983 0.67 0.660931
Target:  5'- gCCGCagCgGGUCGCGg--UCGACGACGa -3'
miRNA:   3'- gGGUGa-G-CUAGCGCaggAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 10263 0.68 0.654504
Target:  5'- gCCCGgUUGGUCGCGgcgCaCUCGGCcuugaaccgcucgguGACGa -3'
miRNA:   3'- -GGGUgAGCUAGCGCa--G-GAGCUG---------------CUGC- -5'
12804 5' -55.6 NC_003387.1 + 9789 0.68 0.650216
Target:  5'- uCUgGCg-GGUCGCGcUUUCGACGACGg -3'
miRNA:   3'- -GGgUGagCUAGCGCaGGAGCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.