miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12805 3' -56.3 NC_003387.1 + 16159 0.66 0.610558
Target:  5'- uUGCCCG-CCAG-CAUGuucGCCAGCu- -3'
miRNA:   3'- gACGGGCaGGUCuGUAUc--UGGUCGca -5'
12805 3' -56.3 NC_003387.1 + 12209 0.66 0.599561
Target:  5'- gCUGCUCGgugCCGGGCc---ACCGGCGg -3'
miRNA:   3'- -GACGGGCa--GGUCUGuaucUGGUCGCa -5'
12805 3' -56.3 NC_003387.1 + 50771 0.67 0.555936
Target:  5'- gCUGCCCGgCCAGACccgcGGCCGGa-- -3'
miRNA:   3'- -GACGGGCaGGUCUGuau-CUGGUCgca -5'
12805 3' -56.3 NC_003387.1 + 47034 0.67 0.555936
Target:  5'- -gGCCCGgCCGGGCAUgAGGCgUGGCGc -3'
miRNA:   3'- gaCGGGCaGGUCUGUA-UCUG-GUCGCa -5'
12805 3' -56.3 NC_003387.1 + 34783 0.67 0.554856
Target:  5'- uCUGCCCGUCCucGGGCGccuUGGugUugucguagucgggGGCGUc -3'
miRNA:   3'- -GACGGGCAGG--UCUGU---AUCugG-------------UCGCA- -5'
12805 3' -56.3 NC_003387.1 + 23932 0.68 0.523827
Target:  5'- gCUGCCCGgcuggCUcGACcgGGGCaCGGCGa -3'
miRNA:   3'- -GACGGGCa----GGuCUGuaUCUG-GUCGCa -5'
12805 3' -56.3 NC_003387.1 + 42733 0.68 0.513279
Target:  5'- cCUGCUCGUCaGGGCGUgcucGGAUCGGCu- -3'
miRNA:   3'- -GACGGGCAGgUCUGUA----UCUGGUCGca -5'
12805 3' -56.3 NC_003387.1 + 40264 0.68 0.482186
Target:  5'- -gGCCCGcggCCAGGCcgccGCCAGCGa -3'
miRNA:   3'- gaCGGGCa--GGUCUGuaucUGGUCGCa -5'
12805 3' -56.3 NC_003387.1 + 8137 0.69 0.461972
Target:  5'- gCUGuCCCGgCCGGGCAgcGACC-GCGa -3'
miRNA:   3'- -GAC-GGGCaGGUCUGUauCUGGuCGCa -5'
12805 3' -56.3 NC_003387.1 + 7926 0.69 0.452033
Target:  5'- -aGCCCGUCgAGgaucGCGcGGGCCAGCu- -3'
miRNA:   3'- gaCGGGCAGgUC----UGUaUCUGGUCGca -5'
12805 3' -56.3 NC_003387.1 + 2218 0.69 0.442212
Target:  5'- gUGCUCG-CCGGuCAggcGGCCAGCGUc -3'
miRNA:   3'- gACGGGCaGGUCuGUau-CUGGUCGCA- -5'
12805 3' -56.3 NC_003387.1 + 45843 0.7 0.377047
Target:  5'- -aGCCgGUgCCAcGACGgcGACCGGCGUc -3'
miRNA:   3'- gaCGGgCA-GGU-CUGUauCUGGUCGCA- -5'
12805 3' -56.3 NC_003387.1 + 23853 0.71 0.359653
Target:  5'- -cGCCgcaGUCgGGGcCGUGGACCGGCGa -3'
miRNA:   3'- gaCGGg--CAGgUCU-GUAUCUGGUCGCa -5'
12805 3' -56.3 NC_003387.1 + 24486 0.71 0.326577
Target:  5'- gCUGCgCGUCCuGGCc--GACCGGCGg -3'
miRNA:   3'- -GACGgGCAGGuCUGuauCUGGUCGCa -5'
12805 3' -56.3 NC_003387.1 + 35032 1.07 0.001045
Target:  5'- gCUGCCCGUCCAGACAUAGACCAGCGUc -3'
miRNA:   3'- -GACGGGCAGGUCUGUAUCUGGUCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.