miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12805 5' -58 NC_003387.1 + 20457 0.68 0.482228
Target:  5'- cCCACGCCUUGUcggCCUcGgcgacggccaggCGGUCGGccaGCu -3'
miRNA:   3'- -GGUGCGGAACG---GGAaCa-----------GCCAGCC---CG- -5'
12805 5' -58 NC_003387.1 + 7506 0.68 0.435735
Target:  5'- aCCACGCCacgaucgGCCgCggGUCGaaCGGGCc -3'
miRNA:   3'- -GGUGCGGaa-----CGG-GaaCAGCcaGCCCG- -5'
12805 5' -58 NC_003387.1 + 50918 0.68 0.453836
Target:  5'- gCCGCGCCggucagcuucaccUUGaCCUUG-CGGgcuuucagcUCGGGCg -3'
miRNA:   3'- -GGUGCGG-------------AACgGGAACaGCC---------AGCCCG- -5'
12805 5' -58 NC_003387.1 + 33422 0.68 0.458667
Target:  5'- gUCACGCCgagcuggaucgggcUGCCCgaggCGGUCaGGCc -3'
miRNA:   3'- -GGUGCGGa-------------ACGGGaacaGCCAGcCCG- -5'
12805 5' -58 NC_003387.1 + 22995 0.68 0.464501
Target:  5'- cCCGCGUagcUGCCgUcGUCGGcCuGGGCg -3'
miRNA:   3'- -GGUGCGga-ACGGgAaCAGCCaG-CCCG- -5'
12805 5' -58 NC_003387.1 + 24715 0.69 0.399035
Target:  5'- gCCGCGCUcgucggUGCCC---UCGaUCGGGCg -3'
miRNA:   3'- -GGUGCGGa-----ACGGGaacAGCcAGCCCG- -5'
12805 5' -58 NC_003387.1 + 48083 0.69 0.426377
Target:  5'- gCCGgGCCUUGUCCUUaUCGGcCuuGGCc -3'
miRNA:   3'- -GGUgCGGAACGGGAAcAGCCaGc-CCG- -5'
12805 5' -58 NC_003387.1 + 8285 0.69 0.399035
Target:  5'- -aGCGCCUcGUgCgcGUCGG-CGGGCa -3'
miRNA:   3'- ggUGCGGAaCGgGaaCAGCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 15956 0.69 0.426377
Target:  5'- cUCGCGCCUgcaUGUgCUUG-CGGuggaggacaauUCGGGCc -3'
miRNA:   3'- -GGUGCGGA---ACGgGAACaGCC-----------AGCCCG- -5'
12805 5' -58 NC_003387.1 + 24951 0.69 0.399036
Target:  5'- gC-CGCCUgaugGCCUggGUCGGUUGGcaGCu -3'
miRNA:   3'- gGuGCGGAa---CGGGaaCAGCCAGCC--CG- -5'
12805 5' -58 NC_003387.1 + 39153 0.69 0.390174
Target:  5'- gCCgACGUCcUGCCC--GUCGaUCGGGCu -3'
miRNA:   3'- -GG-UGCGGaACGGGaaCAGCcAGCCCG- -5'
12805 5' -58 NC_003387.1 + 39205 0.7 0.356042
Target:  5'- aCCAgGCC---CCCg---CGGUCGGGCa -3'
miRNA:   3'- -GGUgCGGaacGGGaacaGCCAGCCCG- -5'
12805 5' -58 NC_003387.1 + 10249 0.7 0.347843
Target:  5'- cCCACGgCgggaucGCCCg-GUUGGUCGcGGCg -3'
miRNA:   3'- -GGUGCgGaa----CGGGaaCAGCCAGC-CCG- -5'
12805 5' -58 NC_003387.1 + 28777 0.7 0.347843
Target:  5'- cCCAUGUCgccgUGCCCgcgGUCGagccaGcCGGGCa -3'
miRNA:   3'- -GGUGCGGa---ACGGGaa-CAGC-----CaGCCCG- -5'
12805 5' -58 NC_003387.1 + 21472 0.71 0.316411
Target:  5'- -gGCGCa--GCCCgcGcCGGUCGGGCc -3'
miRNA:   3'- ggUGCGgaaCGGGaaCaGCCAGCCCG- -5'
12805 5' -58 NC_003387.1 + 5688 0.71 0.331853
Target:  5'- gCCACGCCUcaUGCCC-----GGcCGGGCc -3'
miRNA:   3'- -GGUGCGGA--ACGGGaacagCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 39403 0.71 0.324064
Target:  5'- -aACGUCUUGCCCagGUCGcugccGUCGaGGCc -3'
miRNA:   3'- ggUGCGGAACGGGaaCAGC-----CAGC-CCG- -5'
12805 5' -58 NC_003387.1 + 34797 0.71 0.308895
Target:  5'- -gGCGCCUUGgUgUUGUCGuaGUCGGGg -3'
miRNA:   3'- ggUGCGGAACgGgAACAGC--CAGCCCg -5'
12805 5' -58 NC_003387.1 + 37105 0.73 0.223435
Target:  5'- gCGCGCCcucgacgUGCUCgacGUCGGcCGGGCc -3'
miRNA:   3'- gGUGCGGa------ACGGGaa-CAGCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 23465 0.73 0.241185
Target:  5'- gCCAuCGCCUcguacUGCucgaCCUUGUCGGcCGGGa -3'
miRNA:   3'- -GGU-GCGGA-----ACG----GGAACAGCCaGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.