Results 61 - 67 of 67 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 12805 | 5' | -58 | NC_003387.1 | + | 45547 | 0.67 | 0.535139 |
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Target: 5'- aCC-CGCUUgaucgGCCCcgguguuggUGUCGGgacCGGGUa -3' miRNA: 3'- -GGuGCGGAa----CGGGa--------ACAGCCa--GCCCG- -5' |
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| 12805 | 5' | -58 | NC_003387.1 | + | 45653 | 0.67 | 0.52479 |
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Target: 5'- gC-CGCCUgGCgCCgaaggUGUcCGGUCaGGGCg -3' miRNA: 3'- gGuGCGGAaCG-GGa----ACA-GCCAG-CCCG- -5' |
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| 12805 | 5' | -58 | NC_003387.1 | + | 46904 | 0.67 | 0.524789 |
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Target: 5'- gCCcCGCCUUGCgCgggGUugcgcuucggUGGUgCGGGCg -3' miRNA: 3'- -GGuGCGGAACGgGaa-CA----------GCCA-GCCCG- -5' |
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| 12805 | 5' | -58 | NC_003387.1 | + | 47420 | 0.68 | 0.474308 |
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Target: 5'- uCCACGCUcacccGCCCa----GGUUGGGCg -3' miRNA: 3'- -GGUGCGGaa---CGGGaacagCCAGCCCG- -5' |
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| 12805 | 5' | -58 | NC_003387.1 | + | 48083 | 0.69 | 0.426377 |
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Target: 5'- gCCGgGCCUUGUCCUUaUCGGcCuuGGCc -3' miRNA: 3'- -GGUgCGGAACGGGAAcAGCCaGc-CCG- -5' |
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| 12805 | 5' | -58 | NC_003387.1 | + | 48151 | 0.67 | 0.504328 |
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Target: 5'- gCGCGCCaccgagGCCCgcg-CGGUCGcgcaGGCg -3' miRNA: 3'- gGUGCGGaa----CGGGaacaGCCAGC----CCG- -5' |
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| 12805 | 5' | -58 | NC_003387.1 | + | 50918 | 0.68 | 0.453836 |
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Target: 5'- gCCGCGCCggucagcuucaccUUGaCCUUG-CGGgcuuucagcUCGGGCg -3' miRNA: 3'- -GGUGCGG-------------AACgGGAACaGCC---------AGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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