miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12805 5' -58 NC_003387.1 + 38087 0.76 0.142744
Target:  5'- cCCucgGCCUUGCCCUUcgcguacacGUCGGcCGGGUu -3'
miRNA:   3'- -GGug-CGGAACGGGAA---------CAGCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 37379 0.68 0.454801
Target:  5'- -gGCGgCggcGCCCcgcUGUCGGuaUCGGGCa -3'
miRNA:   3'- ggUGCgGaa-CGGGa--ACAGCC--AGCCCG- -5'
12805 5' -58 NC_003387.1 + 37105 0.73 0.223435
Target:  5'- gCGCGCCcucgacgUGCUCgacGUCGGcCGGGCc -3'
miRNA:   3'- gGUGCGGa------ACGGGaa-CAGCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 35792 0.66 0.566585
Target:  5'- aCCgaACGUCguagcggcGCCCcaugUUGUCGGcCGGGUa -3'
miRNA:   3'- -GG--UGCGGaa------CGGG----AACAGCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 35164 0.66 0.556043
Target:  5'- -gGCGUUgucGCCCUUGUCacccuUCGGGCc -3'
miRNA:   3'- ggUGCGGaa-CGGGAACAGcc---AGCCCG- -5'
12805 5' -58 NC_003387.1 + 35067 1.12 0.000337
Target:  5'- aCCACGCCUUGCCCUUGUCGGUCGGGCc -3'
miRNA:   3'- -GGUGCGGAACGGGAACAGCCAGCCCG- -5'
12805 5' -58 NC_003387.1 + 34797 0.71 0.308895
Target:  5'- -gGCGCCUUGgUgUUGUCGuaGUCGGGg -3'
miRNA:   3'- ggUGCGGAACgGgAACAGC--CAGCCCg -5'
12805 5' -58 NC_003387.1 + 33422 0.68 0.458667
Target:  5'- gUCACGCCgagcuggaucgggcUGCCCgaggCGGUCaGGCc -3'
miRNA:   3'- -GGUGCGGa-------------ACGGGaacaGCCAGcCCG- -5'
12805 5' -58 NC_003387.1 + 31947 0.68 0.47826
Target:  5'- uCCGCGCCggucgcauccccgGCCgCaagGUCGGUCGucacuGGCg -3'
miRNA:   3'- -GGUGCGGaa-----------CGG-Gaa-CAGCCAGC-----CCG- -5'
12805 5' -58 NC_003387.1 + 30235 0.67 0.491214
Target:  5'- uUCGCGCCagUUGgCCgggucGUCGGggucggcgccggggUCGGGCa -3'
miRNA:   3'- -GGUGCGG--AACgGGaa---CAGCC--------------AGCCCG- -5'
12805 5' -58 NC_003387.1 + 30182 0.66 0.592078
Target:  5'- aCCGCGUCgagccaGCCCUcggccugggccaggGUCGcGgCGGGCa -3'
miRNA:   3'- -GGUGCGGaa----CGGGAa-------------CAGC-CaGCCCG- -5'
12805 5' -58 NC_003387.1 + 28777 0.7 0.347843
Target:  5'- cCCAUGUCgccgUGCCCgcgGUCGagccaGcCGGGCa -3'
miRNA:   3'- -GGUGCGGa---ACGGGaa-CAGC-----CaGCCCG- -5'
12805 5' -58 NC_003387.1 + 28298 0.68 0.435735
Target:  5'- gCACGCCUggGCaCCcc-UCGGUaucgCGGGCg -3'
miRNA:   3'- gGUGCGGAa-CG-GGaacAGCCA----GCCCG- -5'
12805 5' -58 NC_003387.1 + 27820 0.66 0.598485
Target:  5'- -aACGCaCUUGCCggugccGUCGGUggacaGGGCg -3'
miRNA:   3'- ggUGCG-GAACGGgaa---CAGCCAg----CCCG- -5'
12805 5' -58 NC_003387.1 + 27778 0.73 0.223435
Target:  5'- cCCAgGCCaucaggcgGCCCcgccGUCGGUCGcGGCg -3'
miRNA:   3'- -GGUgCGGaa------CGGGaa--CAGCCAGC-CCG- -5'
12805 5' -58 NC_003387.1 + 26552 0.67 0.53099
Target:  5'- gCACGCgacgacaugacGCCCUUGcgggCGGUgcCGGGCa -3'
miRNA:   3'- gGUGCGgaa--------CGGGAACa---GCCA--GCCCG- -5'
12805 5' -58 NC_003387.1 + 26186 0.66 0.610254
Target:  5'- gUCGCGUgCUUGCCUgacggcucgucgucGUCGGccucgcacuccUCGGGCa -3'
miRNA:   3'- -GGUGCG-GAACGGGaa------------CAGCC-----------AGCCCG- -5'
12805 5' -58 NC_003387.1 + 25463 0.67 0.535139
Target:  5'- cCCGCGUCgcgGCUCaUG-CGGcgcauccugUCGGGCg -3'
miRNA:   3'- -GGUGCGGaa-CGGGaACaGCC---------AGCCCG- -5'
12805 5' -58 NC_003387.1 + 24951 0.69 0.399036
Target:  5'- gC-CGCCUgaugGCCUggGUCGGUUGGcaGCu -3'
miRNA:   3'- gGuGCGGAa---CGGGaaCAGCCAGCC--CG- -5'
12805 5' -58 NC_003387.1 + 24715 0.69 0.399035
Target:  5'- gCCGCGCUcgucggUGCCC---UCGaUCGGGCg -3'
miRNA:   3'- -GGUGCGGa-----ACGGGaacAGCcAGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.