Results 61 - 67 of 67 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12805 | 5' | -58 | NC_003387.1 | + | 6766 | 0.79 | 0.092067 |
Target: 5'- gCACGCCUcGCCCUUgcgcgggccGUCGGcgaacacgcUCGGGCa -3' miRNA: 3'- gGUGCGGAaCGGGAA---------CAGCC---------AGCCCG- -5' |
|||||||
12805 | 5' | -58 | NC_003387.1 | + | 6346 | 0.67 | 0.545559 |
Target: 5'- aCACGCUgcGCCCaccgugucgcgcUUGgccUCGGccgCGGGCg -3' miRNA: 3'- gGUGCGGaaCGGG------------AAC---AGCCa--GCCCG- -5' |
|||||||
12805 | 5' | -58 | NC_003387.1 | + | 5688 | 0.71 | 0.331853 |
Target: 5'- gCCACGCCUcaUGCCC-----GGcCGGGCc -3' miRNA: 3'- -GGUGCGGA--ACGGGaacagCCaGCCCG- -5' |
|||||||
12805 | 5' | -58 | NC_003387.1 | + | 1596 | 0.66 | 0.556043 |
Target: 5'- aCGCGCCcUGgCa-UGuUCGGcCGGGCg -3' miRNA: 3'- gGUGCGGaACgGgaAC-AGCCaGCCCG- -5' |
|||||||
12805 | 5' | -58 | NC_003387.1 | + | 1577 | 0.66 | 0.598485 |
Target: 5'- -aGCGCCUaacGCCCUgg-CGGUCGacaugucgcacGGCc -3' miRNA: 3'- ggUGCGGAa--CGGGAacaGCCAGC-----------CCG- -5' |
|||||||
12805 | 5' | -58 | NC_003387.1 | + | 945 | 0.66 | 0.587814 |
Target: 5'- uCgACGCCcaGCCaccaGUCGGgCGGGUa -3' miRNA: 3'- -GgUGCGGaaCGGgaa-CAGCCaGCCCG- -5' |
|||||||
12805 | 5' | -58 | NC_003387.1 | + | 694 | 0.66 | 0.605971 |
Target: 5'- aCGCaggGCCUUGaucgCCUcGUCgucgagggccgacaGGUCGGGCa -3' miRNA: 3'- gGUG---CGGAACg---GGAaCAG--------------CCAGCCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home