Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12805 | 5' | -58 | NC_003387.1 | + | 47420 | 0.68 | 0.474308 |
Target: 5'- uCCACGCUcacccGCCCa----GGUUGGGCg -3' miRNA: 3'- -GGUGCGGaa---CGGGaacagCCAGCCCG- -5' |
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12805 | 5' | -58 | NC_003387.1 | + | 20457 | 0.68 | 0.482228 |
Target: 5'- cCCACGCCUUGUcggCCUcGgcgacggccaggCGGUCGGccaGCu -3' miRNA: 3'- -GGUGCGGAACG---GGAaCa-----------GCCAGCC---CG- -5' |
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12805 | 5' | -58 | NC_003387.1 | + | 30235 | 0.67 | 0.491214 |
Target: 5'- uUCGCGCCagUUGgCCgggucGUCGGggucggcgccggggUCGGGCa -3' miRNA: 3'- -GGUGCGG--AACgGGaa---CAGCC--------------AGCCCG- -5' |
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12805 | 5' | -58 | NC_003387.1 | + | 18968 | 0.67 | 0.511451 |
Target: 5'- gCgGCGCCgccgUUGCCCUUGcCGGggugccgcuuagacgGGGCc -3' miRNA: 3'- -GgUGCGG----AACGGGAACaGCCag-------------CCCG- -5' |
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12805 | 5' | -58 | NC_003387.1 | + | 38716 | 0.67 | 0.524789 |
Target: 5'- gUACGCCggguUGCCCUgccagucauUCGGauacUUGGGCg -3' miRNA: 3'- gGUGCGGa---ACGGGAac-------AGCC----AGCCCG- -5' |
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12805 | 5' | -58 | NC_003387.1 | + | 46904 | 0.67 | 0.524789 |
Target: 5'- gCCcCGCCUUGCgCgggGUugcgcuucggUGGUgCGGGCg -3' miRNA: 3'- -GGuGCGGAACGgGaa-CA----------GCCA-GCCCG- -5' |
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12805 | 5' | -58 | NC_003387.1 | + | 45547 | 0.67 | 0.535139 |
Target: 5'- aCC-CGCUUgaucgGCCCcgguguuggUGUCGGgacCGGGUa -3' miRNA: 3'- -GGuGCGGAa----CGGGa--------ACAGCCa--GCCCG- -5' |
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12805 | 5' | -58 | NC_003387.1 | + | 18338 | 0.67 | 0.545559 |
Target: 5'- gUCGCGCCguuuCCgUUGUCGccGUUGGGUu -3' miRNA: 3'- -GGUGCGGaac-GGgAACAGC--CAGCCCG- -5' |
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12805 | 5' | -58 | NC_003387.1 | + | 44386 | 0.67 | 0.545559 |
Target: 5'- gCACGUCgggGUCgUcgagGUCGGcCGGGCc -3' miRNA: 3'- gGUGCGGaa-CGGgAa---CAGCCaGCCCG- -5' |
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12805 | 5' | -58 | NC_003387.1 | + | 22995 | 0.68 | 0.464501 |
Target: 5'- cCCGCGUagcUGCCgUcGUCGGcCuGGGCg -3' miRNA: 3'- -GGUGCGga-ACGGgAaCAGCCaG-CCCG- -5' |
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12805 | 5' | -58 | NC_003387.1 | + | 33422 | 0.68 | 0.458667 |
Target: 5'- gUCACGCCgagcuggaucgggcUGCCCgaggCGGUCaGGCc -3' miRNA: 3'- -GGUGCGGa-------------ACGGGaacaGCCAGcCCG- -5' |
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12805 | 5' | -58 | NC_003387.1 | + | 39403 | 0.71 | 0.324064 |
Target: 5'- -aACGUCUUGCCCagGUCGcugccGUCGaGGCc -3' miRNA: 3'- ggUGCGGAACGGGaaCAGC-----CAGC-CCG- -5' |
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12805 | 5' | -58 | NC_003387.1 | + | 5688 | 0.71 | 0.331853 |
Target: 5'- gCCACGCCUcaUGCCC-----GGcCGGGCc -3' miRNA: 3'- -GGUGCGGA--ACGGGaacagCCaGCCCG- -5' |
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12805 | 5' | -58 | NC_003387.1 | + | 10249 | 0.7 | 0.347843 |
Target: 5'- cCCACGgCgggaucGCCCg-GUUGGUCGcGGCg -3' miRNA: 3'- -GGUGCgGaa----CGGGaaCAGCCAGC-CCG- -5' |
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12805 | 5' | -58 | NC_003387.1 | + | 28777 | 0.7 | 0.347843 |
Target: 5'- cCCAUGUCgccgUGCCCgcgGUCGagccaGcCGGGCa -3' miRNA: 3'- -GGUGCGGa---ACGGGaa-CAGC-----CaGCCCG- -5' |
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12805 | 5' | -58 | NC_003387.1 | + | 39153 | 0.69 | 0.390174 |
Target: 5'- gCCgACGUCcUGCCC--GUCGaUCGGGCu -3' miRNA: 3'- -GG-UGCGGaACGGGaaCAGCcAGCCCG- -5' |
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12805 | 5' | -58 | NC_003387.1 | + | 8285 | 0.69 | 0.399035 |
Target: 5'- -aGCGCCUcGUgCgcGUCGG-CGGGCa -3' miRNA: 3'- ggUGCGGAaCGgGaaCAGCCaGCCCG- -5' |
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12805 | 5' | -58 | NC_003387.1 | + | 39468 | 0.67 | 0.549745 |
Target: 5'- ---gGCCUUGCCCUuggugcgcagaucgcUGUCGGccugcUCGGcGUc -3' miRNA: 3'- ggugCGGAACGGGA---------------ACAGCC-----AGCC-CG- -5' |
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12805 | 5' | -58 | NC_003387.1 | + | 7506 | 0.68 | 0.435735 |
Target: 5'- aCCACGCCacgaucgGCCgCggGUCGaaCGGGCc -3' miRNA: 3'- -GGUGCGGaa-----CGG-GaaCAGCcaGCCCG- -5' |
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12805 | 5' | -58 | NC_003387.1 | + | 50918 | 0.68 | 0.453836 |
Target: 5'- gCCGCGCCggucagcuucaccUUGaCCUUG-CGGgcuuucagcUCGGGCg -3' miRNA: 3'- -GGUGCGG-------------AACgGGAACaGCC---------AGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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