miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12805 5' -58 NC_003387.1 + 39468 0.67 0.549745
Target:  5'- ---gGCCUUGCCCUuggugcgcagaucgcUGUCGGccugcUCGGcGUc -3'
miRNA:   3'- ggugCGGAACGGGA---------------ACAGCC-----AGCC-CG- -5'
12805 5' -58 NC_003387.1 + 44386 0.67 0.545559
Target:  5'- gCACGUCgggGUCgUcgagGUCGGcCGGGCc -3'
miRNA:   3'- gGUGCGGaa-CGGgAa---CAGCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 18771 0.67 0.545559
Target:  5'- gUCGCGUgUcgacUGCCCuUUGUCGGggaaccacagcUCGGGg -3'
miRNA:   3'- -GGUGCGgA----ACGGG-AACAGCC-----------AGCCCg -5'
12805 5' -58 NC_003387.1 + 18338 0.67 0.545559
Target:  5'- gUCGCGCCguuuCCgUUGUCGccGUUGGGUu -3'
miRNA:   3'- -GGUGCGGaac-GGgAACAGC--CAGCCCG- -5'
12805 5' -58 NC_003387.1 + 6346 0.67 0.545559
Target:  5'- aCACGCUgcGCCCaccgugucgcgcUUGgccUCGGccgCGGGCg -3'
miRNA:   3'- gGUGCGGaaCGGG------------AAC---AGCCa--GCCCG- -5'
12805 5' -58 NC_003387.1 + 8073 0.67 0.535139
Target:  5'- cCCGCGCUaa-CCCgcUGcCGGUCGGcGCc -3'
miRNA:   3'- -GGUGCGGaacGGGa-ACaGCCAGCC-CG- -5'
12805 5' -58 NC_003387.1 + 25463 0.67 0.535139
Target:  5'- cCCGCGUCgcgGCUCaUG-CGGcgcauccugUCGGGCg -3'
miRNA:   3'- -GGUGCGGaa-CGGGaACaGCC---------AGCCCG- -5'
12805 5' -58 NC_003387.1 + 45547 0.67 0.535139
Target:  5'- aCC-CGCUUgaucgGCCCcgguguuggUGUCGGgacCGGGUa -3'
miRNA:   3'- -GGuGCGGAa----CGGGa--------ACAGCCa--GCCCG- -5'
12805 5' -58 NC_003387.1 + 26552 0.67 0.53099
Target:  5'- gCACGCgacgacaugacGCCCUUGcgggCGGUgcCGGGCa -3'
miRNA:   3'- gGUGCGgaa--------CGGGAACa---GCCA--GCCCG- -5'
12805 5' -58 NC_003387.1 + 45653 0.67 0.52479
Target:  5'- gC-CGCCUgGCgCCgaaggUGUcCGGUCaGGGCg -3'
miRNA:   3'- gGuGCGGAaCG-GGa----ACA-GCCAG-CCCG- -5'
12805 5' -58 NC_003387.1 + 38716 0.67 0.524789
Target:  5'- gUACGCCggguUGCCCUgccagucauUCGGauacUUGGGCg -3'
miRNA:   3'- gGUGCGGa---ACGGGAac-------AGCC----AGCCCG- -5'
12805 5' -58 NC_003387.1 + 46904 0.67 0.524789
Target:  5'- gCCcCGCCUUGCgCgggGUugcgcuucggUGGUgCGGGCg -3'
miRNA:   3'- -GGuGCGGAACGgGaa-CA----------GCCA-GCCCG- -5'
12805 5' -58 NC_003387.1 + 18968 0.67 0.511451
Target:  5'- gCgGCGCCgccgUUGCCCUUGcCGGggugccgcuuagacgGGGCc -3'
miRNA:   3'- -GgUGCGG----AACGGGAACaGCCag-------------CCCG- -5'
12805 5' -58 NC_003387.1 + 48151 0.67 0.504328
Target:  5'- gCGCGCCaccgagGCCCgcg-CGGUCGcgcaGGCg -3'
miRNA:   3'- gGUGCGGaa----CGGGaacaGCCAGC----CCG- -5'
12805 5' -58 NC_003387.1 + 30235 0.67 0.491214
Target:  5'- uUCGCGCCagUUGgCCgggucGUCGGggucggcgccggggUCGGGCa -3'
miRNA:   3'- -GGUGCGG--AACgGGaa---CAGCC--------------AGCCCG- -5'
12805 5' -58 NC_003387.1 + 20457 0.68 0.482228
Target:  5'- cCCACGCCUUGUcggCCUcGgcgacggccaggCGGUCGGccaGCu -3'
miRNA:   3'- -GGUGCGGAACG---GGAaCa-----------GCCAGCC---CG- -5'
12805 5' -58 NC_003387.1 + 31947 0.68 0.47826
Target:  5'- uCCGCGCCggucgcauccccgGCCgCaagGUCGGUCGucacuGGCg -3'
miRNA:   3'- -GGUGCGGaa-----------CGG-Gaa-CAGCCAGC-----CCG- -5'
12805 5' -58 NC_003387.1 + 42760 0.68 0.474308
Target:  5'- gCUGCGCUggUGCCC----CGaGUCGGGCa -3'
miRNA:   3'- -GGUGCGGa-ACGGGaacaGC-CAGCCCG- -5'
12805 5' -58 NC_003387.1 + 47420 0.68 0.474308
Target:  5'- uCCACGCUcacccGCCCa----GGUUGGGCg -3'
miRNA:   3'- -GGUGCGGaa---CGGGaacagCCAGCCCG- -5'
12805 5' -58 NC_003387.1 + 22995 0.68 0.464501
Target:  5'- cCCGCGUagcUGCCgUcGUCGGcCuGGGCg -3'
miRNA:   3'- -GGUGCGga-ACGGgAaCAGCCaG-CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.