miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12806 3' -59 NC_003387.1 + 51973 0.67 0.492618
Target:  5'- cUGCCgCGGUGGCcgACcGCaUCCugGCg -3'
miRNA:   3'- -ACGG-GCCACUGcaUGcCGcAGGugCG- -5'
12806 3' -59 NC_003387.1 + 25847 0.67 0.492618
Target:  5'- cUGCUCGGUGGCGgcaAgGGUGgCC-UGCa -3'
miRNA:   3'- -ACGGGCCACUGCa--UgCCGCaGGuGCG- -5'
12806 3' -59 NC_003387.1 + 25296 0.67 0.492618
Target:  5'- aGCCagGGcGACGUcggcGCGGUGgugCCAgCGCg -3'
miRNA:   3'- aCGGg-CCaCUGCA----UGCCGCa--GGU-GCG- -5'
12806 3' -59 NC_003387.1 + 19075 0.67 0.492618
Target:  5'- gGCCaCGGUGAUGcccUGCagcguguaGGCGUCCAUc- -3'
miRNA:   3'- aCGG-GCCACUGC---AUG--------CCGCAGGUGcg -5'
12806 3' -59 NC_003387.1 + 25178 0.67 0.492618
Target:  5'- gGCgCGGUGGCcc-CGGCGccgCCGcCGCg -3'
miRNA:   3'- aCGgGCCACUGcauGCCGCa--GGU-GCG- -5'
12806 3' -59 NC_003387.1 + 20298 0.67 0.492618
Target:  5'- aGCUgGGcUGcuACGUcaACGGCGUCCgguACGUg -3'
miRNA:   3'- aCGGgCC-AC--UGCA--UGCCGCAGG---UGCG- -5'
12806 3' -59 NC_003387.1 + 44176 0.67 0.482694
Target:  5'- gUGUuuGGUGACcUGCGGaaaugCUGCGCg -3'
miRNA:   3'- -ACGggCCACUGcAUGCCgca--GGUGCG- -5'
12806 3' -59 NC_003387.1 + 6418 0.67 0.482694
Target:  5'- gGCCgCGGUGAC-UGCGG-G-CCAgGCc -3'
miRNA:   3'- aCGG-GCCACUGcAUGCCgCaGGUgCG- -5'
12806 3' -59 NC_003387.1 + 23912 0.67 0.482694
Target:  5'- cGuCuuGGUGGCGUGCGcuucCCACGCc -3'
miRNA:   3'- aC-GggCCACUGCAUGCcgcaGGUGCG- -5'
12806 3' -59 NC_003387.1 + 29761 0.67 0.482694
Target:  5'- cGCCgaCGGcaUGACGaucagcUACGGCGUgCACcGCa -3'
miRNA:   3'- aCGG--GCC--ACUGC------AUGCCGCAgGUG-CG- -5'
12806 3' -59 NC_003387.1 + 458 0.67 0.482694
Target:  5'- cGCCgCGGcGGCcgACGGCGaCCgGCGCg -3'
miRNA:   3'- aCGG-GCCaCUGcaUGCCGCaGG-UGCG- -5'
12806 3' -59 NC_003387.1 + 27375 0.67 0.472867
Target:  5'- aGaCUCGGUGcggGCGUucACGGCGUUCucuguguacgacGCGCg -3'
miRNA:   3'- aC-GGGCCAC---UGCA--UGCCGCAGG------------UGCG- -5'
12806 3' -59 NC_003387.1 + 10966 0.67 0.472867
Target:  5'- cGCCgGGUGAuCGgaagaauaucgGCGGCG-CCGCa- -3'
miRNA:   3'- aCGGgCCACU-GCa----------UGCCGCaGGUGcg -5'
12806 3' -59 NC_003387.1 + 14173 0.67 0.47189
Target:  5'- gGCCgGGccgcgGGCGUGagGGCGUCgugauggCGCGCg -3'
miRNA:   3'- aCGGgCCa----CUGCAUg-CCGCAG-------GUGCG- -5'
12806 3' -59 NC_003387.1 + 7813 0.67 0.453523
Target:  5'- aGCCCGGcGACGcgaUACGGauaUgCGCGCc -3'
miRNA:   3'- aCGGGCCaCUGC---AUGCCgc-AgGUGCG- -5'
12806 3' -59 NC_003387.1 + 12467 0.67 0.453523
Target:  5'- gGCCUGGccGCGggccUGGCGUCCGaGCa -3'
miRNA:   3'- aCGGGCCacUGCau--GCCGCAGGUgCG- -5'
12806 3' -59 NC_003387.1 + 29054 0.67 0.447804
Target:  5'- cGCCgGGgGGCGUuuCGGCGUUucuagggccuguugaCGCGCc -3'
miRNA:   3'- aCGGgCCaCUGCAu-GCCGCAG---------------GUGCG- -5'
12806 3' -59 NC_003387.1 + 10991 0.67 0.444013
Target:  5'- aGCCgGGUGACGUccuCGGcCGUgCCcCGg -3'
miRNA:   3'- aCGGgCCACUGCAu--GCC-GCA-GGuGCg -5'
12806 3' -59 NC_003387.1 + 29722 0.67 0.444013
Target:  5'- cGCCCaGGccGACG-ACGGCaG-CUACGCg -3'
miRNA:   3'- aCGGG-CCa-CUGCaUGCCG-CaGGUGCG- -5'
12806 3' -59 NC_003387.1 + 41756 0.67 0.444013
Target:  5'- gGCCgCGGUGugGUGCGaccucgaCGUCaagccggGCGCg -3'
miRNA:   3'- aCGG-GCCACugCAUGCc------GCAGg------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.