miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12806 5' -52.9 NC_003387.1 + 51354 0.72 0.496878
Target:  5'- uGCGCCaCuGCGAgcgGU-CGUCGGGGUCg -3'
miRNA:   3'- -CGCGGaGcUGCUa--CAuGCAGUCCUAG- -5'
12806 5' -52.9 NC_003387.1 + 50389 0.71 0.539461
Target:  5'- gGCgGCCUCGAcaccgcCGAgcUGUACGUCGGGcggcagAUCg -3'
miRNA:   3'- -CG-CGGAGCU------GCU--ACAUGCAGUCC------UAG- -5'
12806 5' -52.9 NC_003387.1 + 49833 0.66 0.821711
Target:  5'- cGCGCC-CGGCGAgcgaguuccugccgaUGUACGaCgAGGAguUCg -3'
miRNA:   3'- -CGCGGaGCUGCU---------------ACAUGCaG-UCCU--AG- -5'
12806 5' -52.9 NC_003387.1 + 49428 0.7 0.594275
Target:  5'- gGCGCCcgagUCGGCGGccg-UGUCGGGGUCg -3'
miRNA:   3'- -CGCGG----AGCUGCUacauGCAGUCCUAG- -5'
12806 5' -52.9 NC_003387.1 + 45759 0.69 0.661007
Target:  5'- cGC-CCUCGACGAgg-GCGgccagCAGGGUg -3'
miRNA:   3'- -CGcGGAGCUGCUacaUGCa----GUCCUAg -5'
12806 5' -52.9 NC_003387.1 + 44804 0.7 0.61649
Target:  5'- cGCGauCCUCGACGGgcUGaccgACGUCGuguGGAUCg -3'
miRNA:   3'- -CGC--GGAGCUGCU--ACa---UGCAGU---CCUAG- -5'
12806 5' -52.9 NC_003387.1 + 43223 0.67 0.797831
Target:  5'- cGUGCCgucgggguacucgUUGACGccGUAC-UCGGGGUCg -3'
miRNA:   3'- -CGCGG-------------AGCUGCuaCAUGcAGUCCUAG- -5'
12806 5' -52.9 NC_003387.1 + 42186 0.69 0.694141
Target:  5'- aGCGCCUCaACGAggcgggcGUGCGcgagCAGGAc- -3'
miRNA:   3'- -CGCGGAGcUGCUa------CAUGCa---GUCCUag -5'
12806 5' -52.9 NC_003387.1 + 38892 0.66 0.835437
Target:  5'- cGCGCCgaacCGugGAgcggGUGCGggcguuugcucgcUguGGAUCu -3'
miRNA:   3'- -CGCGGa---GCugCUa---CAUGC-------------AguCCUAG- -5'
12806 5' -52.9 NC_003387.1 + 37868 0.66 0.840792
Target:  5'- uCGCCUCGACGAUGcuugaacuugaccGCGUCAaccccgaGGGc- -3'
miRNA:   3'- cGCGGAGCUGCUACa------------UGCAGU-------CCUag -5'
12806 5' -52.9 NC_003387.1 + 37570 0.68 0.705078
Target:  5'- cGCGCgUCGAgguaGGUGUACGcggCAaucGGGUCg -3'
miRNA:   3'- -CGCGgAGCUg---CUACAUGCa--GU---CCUAG- -5'
12806 5' -52.9 NC_003387.1 + 34632 1.13 0.001054
Target:  5'- uGCGCCUCGACGAUGUACGUCAGGAUCg -3'
miRNA:   3'- -CGCGGAGCUGCUACAUGCAGUCCUAG- -5'
12806 5' -52.9 NC_003387.1 + 33869 0.7 0.61649
Target:  5'- aGCGCCUCGGgcgacgacagguCGAUGccCGUCAGcAUCu -3'
miRNA:   3'- -CGCGGAGCU------------GCUACauGCAGUCcUAG- -5'
12806 5' -52.9 NC_003387.1 + 33214 0.66 0.817972
Target:  5'- aGCGCgaggcccgCUCGGCGAUGgcCGUCAaGAc- -3'
miRNA:   3'- -CGCG--------GAGCUGCUACauGCAGUcCUag -5'
12806 5' -52.9 NC_003387.1 + 30990 0.66 0.817972
Target:  5'- aGCGCCUCGGCGAcgauuuccACGacCAGG-UCg -3'
miRNA:   3'- -CGCGGAGCUGCUaca-----UGCa-GUCCuAG- -5'
12806 5' -52.9 NC_003387.1 + 30237 0.7 0.605371
Target:  5'- cGCGCCagUUGGCcggGU-CGUCGGGGUCg -3'
miRNA:   3'- -CGCGG--AGCUGcuaCAuGCAGUCCUAG- -5'
12806 5' -52.9 NC_003387.1 + 28077 0.73 0.436066
Target:  5'- gGCGaCCUCGcgcagcaggGCGAgGUGCGUCGGG-UCg -3'
miRNA:   3'- -CGC-GGAGC---------UGCUaCAUGCAGUCCuAG- -5'
12806 5' -52.9 NC_003387.1 + 27932 0.67 0.768755
Target:  5'- gGCGCCUCGGgGggGgcuCGgUCGGGGcgcUCg -3'
miRNA:   3'- -CGCGGAGCUgCuaCau-GC-AGUCCU---AG- -5'
12806 5' -52.9 NC_003387.1 + 26795 0.66 0.817972
Target:  5'- cCGCCUCGACGAggccGCGcUGGuGGUCg -3'
miRNA:   3'- cGCGGAGCUGCUaca-UGCaGUC-CUAG- -5'
12806 5' -52.9 NC_003387.1 + 24605 0.68 0.726722
Target:  5'- cGgGCCUCGGCGAUcaGCGccUCAaGGUCg -3'
miRNA:   3'- -CgCGGAGCUGCUAcaUGC--AGUcCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.