miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12806 5' -52.9 NC_003387.1 + 33869 0.7 0.61649
Target:  5'- aGCGCCUCGGgcgacgacagguCGAUGccCGUCAGcAUCu -3'
miRNA:   3'- -CGCGGAGCU------------GCUACauGCAGUCcUAG- -5'
12806 5' -52.9 NC_003387.1 + 44804 0.7 0.61649
Target:  5'- cGCGauCCUCGACGGgcUGaccgACGUCGuguGGAUCg -3'
miRNA:   3'- -CGC--GGAGCUGCU--ACa---UGCAGU---CCUAG- -5'
12806 5' -52.9 NC_003387.1 + 30237 0.7 0.605371
Target:  5'- cGCGCCagUUGGCcggGU-CGUCGGGGUCg -3'
miRNA:   3'- -CGCGG--AGCUGcuaCAuGCAGUCCUAG- -5'
12806 5' -52.9 NC_003387.1 + 1294 0.7 0.60204
Target:  5'- uGCGCCUCGACGcccuggcgggcgacGUcgacgACGUCGGGuacGUCg -3'
miRNA:   3'- -CGCGGAGCUGC--------------UAca---UGCAGUCC---UAG- -5'
12806 5' -52.9 NC_003387.1 + 49428 0.7 0.594275
Target:  5'- gGCGCCcgagUCGGCGGccg-UGUCGGGGUCg -3'
miRNA:   3'- -CGCGG----AGCUGCUacauGCAGUCCUAG- -5'
12806 5' -52.9 NC_003387.1 + 50389 0.71 0.539461
Target:  5'- gGCgGCCUCGAcaccgcCGAgcUGUACGUCGGGcggcagAUCg -3'
miRNA:   3'- -CG-CGGAGCU------GCU--ACAUGCAGUCC------UAG- -5'
12806 5' -52.9 NC_003387.1 + 19008 0.72 0.517996
Target:  5'- uGgGCCUCGACGAaccUGUuCGgauGGAUCg -3'
miRNA:   3'- -CgCGGAGCUGCU---ACAuGCaguCCUAG- -5'
12806 5' -52.9 NC_003387.1 + 20111 0.72 0.510562
Target:  5'- aGCGCCcccgCGGCGAgcccgagcaggaucgACGUCAGGAUg -3'
miRNA:   3'- -CGCGGa---GCUGCUaca------------UGCAGUCCUAg -5'
12806 5' -52.9 NC_003387.1 + 51354 0.72 0.496878
Target:  5'- uGCGCCaCuGCGAgcgGU-CGUCGGGGUCg -3'
miRNA:   3'- -CGCGGaGcUGCUa--CAuGCAGUCCUAG- -5'
12806 5' -52.9 NC_003387.1 + 28077 0.73 0.436066
Target:  5'- gGCGaCCUCGcgcagcaggGCGAgGUGCGUCGGG-UCg -3'
miRNA:   3'- -CGC-GGAGC---------UGCUaCAUGCAGUCCuAG- -5'
12806 5' -52.9 NC_003387.1 + 10688 0.73 0.42635
Target:  5'- cCGCCUCGGCGGUGgcCGcCGGuAUCa -3'
miRNA:   3'- cGCGGAGCUGCUACauGCaGUCcUAG- -5'
12806 5' -52.9 NC_003387.1 + 9033 0.82 0.132632
Target:  5'- gGCGCCgUCGGCGAUccACGcCAGGAUCg -3'
miRNA:   3'- -CGCGG-AGCUGCUAcaUGCaGUCCUAG- -5'
12806 5' -52.9 NC_003387.1 + 34632 1.13 0.001054
Target:  5'- uGCGCCUCGACGAUGUACGUCAGGAUCg -3'
miRNA:   3'- -CGCGGAGCUGCUACAUGCAGUCCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.