miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12808 3' -58.3 NC_003387.1 + 6637 0.66 0.570721
Target:  5'- gGCgGCCGUCuugGGCUCGUCGucgacccGCUCaaGCg -3'
miRNA:   3'- gUG-CGGCGG---UCGAGCAGCua-----CGAG--CG- -5'
12808 3' -58.3 NC_003387.1 + 32874 0.66 0.570721
Target:  5'- aGCGCCGCguCGGCgUCGUCGAgagauUGaUUCGa -3'
miRNA:   3'- gUGCGGCG--GUCG-AGCAGCU-----AC-GAGCg -5'
12808 3' -58.3 NC_003387.1 + 26681 0.66 0.570721
Target:  5'- uGCGUuuCGUgCAGCUCG-CGcUGCUCGUc -3'
miRNA:   3'- gUGCG--GCG-GUCGAGCaGCuACGAGCG- -5'
12808 3' -58.3 NC_003387.1 + 39893 0.66 0.569656
Target:  5'- cCACGCCGCCcuucGGCUUGcCGcccuugacgucacGUGCaCGUg -3'
miRNA:   3'- -GUGCGGCGG----UCGAGCaGC-------------UACGaGCG- -5'
12808 3' -58.3 NC_003387.1 + 29806 0.66 0.564338
Target:  5'- gGCGCCGCUaauuucggucgcguuGGCcgucgCGUCGGU-CUUGCc -3'
miRNA:   3'- gUGCGGCGG---------------UCGa----GCAGCUAcGAGCG- -5'
12808 3' -58.3 NC_003387.1 + 48304 0.66 0.560092
Target:  5'- aACGCCuugcCCAGCUCGgcgUCGAcGUUCuGCc -3'
miRNA:   3'- gUGCGGc---GGUCGAGC---AGCUaCGAG-CG- -5'
12808 3' -58.3 NC_003387.1 + 12190 0.66 0.560092
Target:  5'- uCACGCCcuCgGGCagGUCGcUGCUCGg -3'
miRNA:   3'- -GUGCGGc-GgUCGagCAGCuACGAGCg -5'
12808 3' -58.3 NC_003387.1 + 28223 0.66 0.559032
Target:  5'- gCGCaGCCGCgaCGGCucgaccgagcagaUCGUCGAgcgGUUCGUa -3'
miRNA:   3'- -GUG-CGGCG--GUCG-------------AGCAGCUa--CGAGCG- -5'
12808 3' -58.3 NC_003387.1 + 9639 0.66 0.556914
Target:  5'- gGCGCCcgucacccugguguGCCAGCccUCGgggCGGUgcggggucaGCUCGCc -3'
miRNA:   3'- gUGCGG--------------CGGUCG--AGCa--GCUA---------CGAGCG- -5'
12808 3' -58.3 NC_003387.1 + 42783 0.66 0.555856
Target:  5'- uGCGCUGCCAGUUguugauccguagggCGUCGAucacgugUGCgagcagguaaUCGCu -3'
miRNA:   3'- gUGCGGCGGUCGA--------------GCAGCU-------ACG----------AGCG- -5'
12808 3' -58.3 NC_003387.1 + 40392 0.66 0.549519
Target:  5'- -uCGCCGUUAGCgauacgcgCGagGAUGCugUCGCu -3'
miRNA:   3'- guGCGGCGGUCGa-------GCagCUACG--AGCG- -5'
12808 3' -58.3 NC_003387.1 + 48114 0.66 0.549519
Target:  5'- cUugGCCGCCuuGGCUUGcugcgcgcguUCGA-GCUUGUc -3'
miRNA:   3'- -GugCGGCGG--UCGAGC----------AGCUaCGAGCG- -5'
12808 3' -58.3 NC_003387.1 + 8040 0.66 0.549519
Target:  5'- cCGCGCgaGCCuaucuGCUCGaCGA-GCUgGCg -3'
miRNA:   3'- -GUGCGg-CGGu----CGAGCaGCUaCGAgCG- -5'
12808 3' -58.3 NC_003387.1 + 35581 0.66 0.549519
Target:  5'- gGCGCCcugGCCgAGCUgGUCGAcacaGCgaUCGCc -3'
miRNA:   3'- gUGCGG---CGG-UCGAgCAGCUa---CG--AGCG- -5'
12808 3' -58.3 NC_003387.1 + 50532 0.66 0.548465
Target:  5'- uGCaGCCGCCacaugucGGCgaccaaggCGcCGAgcUGCUCGCg -3'
miRNA:   3'- gUG-CGGCGG-------UCGa-------GCaGCU--ACGAGCG- -5'
12808 3' -58.3 NC_003387.1 + 39155 0.66 0.548465
Target:  5'- cCGCGCCGagGGCguguacugGUCGGUGCgcgacauUCGCg -3'
miRNA:   3'- -GUGCGGCggUCGag------CAGCUACG-------AGCG- -5'
12808 3' -58.3 NC_003387.1 + 8981 0.66 0.539009
Target:  5'- -gUGCCGCCAacacGCUCG-CGG-GCUccCGCa -3'
miRNA:   3'- guGCGGCGGU----CGAGCaGCUaCGA--GCG- -5'
12808 3' -58.3 NC_003387.1 + 23834 0.66 0.539009
Target:  5'- gGCGCCgcGCCGGgaCUCGgcgccgUGccGCUCGCg -3'
miRNA:   3'- gUGCGG--CGGUC--GAGCa-----GCuaCGAGCG- -5'
12808 3' -58.3 NC_003387.1 + 39740 0.66 0.539009
Target:  5'- aGCGCgagauuaucgaCGaCCAGCUCGccgacgCGGUGCgcaagCGCa -3'
miRNA:   3'- gUGCG-----------GC-GGUCGAGCa-----GCUACGa----GCG- -5'
12808 3' -58.3 NC_003387.1 + 10511 0.66 0.539009
Target:  5'- gCGgGgCGCuCGGCUCGgCGAUGCggGCc -3'
miRNA:   3'- -GUgCgGCG-GUCGAGCaGCUACGagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.