miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12808 5' -51.9 NC_003387.1 + 40138 0.66 0.909202
Target:  5'- cCGACGGguGAUCGGGGuaagcGUCcUG-CGACCg -3'
miRNA:   3'- -GCUGCU--UUGGCUCC-----UAGaACgGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 1948 0.66 0.895478
Target:  5'- uGAUccGGCCGcGGGUCUgGCCGGgCa -3'
miRNA:   3'- gCUGcuUUGGCuCCUAGAaCGGCUgG- -5'
12808 5' -51.9 NC_003387.1 + 70 0.66 0.895478
Target:  5'- uCGAuCGgcGCCGcGGGcgUUUGCUGGCUc -3'
miRNA:   3'- -GCU-GCuuUGGC-UCCuaGAACGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 26800 0.66 0.895478
Target:  5'- uCGACGAGGCCGcgcuGGuGGUCggugagcgcGCCGcCCu -3'
miRNA:   3'- -GCUGCUUUGGC----UC-CUAGaa-------CGGCuGG- -5'
12808 5' -51.9 NC_003387.1 + 34765 0.66 0.888206
Target:  5'- cCGACGAccacACCG-GGGUCUgcCCGuCCu -3'
miRNA:   3'- -GCUGCUu---UGGCuCCUAGAacGGCuGG- -5'
12808 5' -51.9 NC_003387.1 + 42215 0.66 0.895478
Target:  5'- uCGcCG-AGCCGAGcgccccgcuGAUCUUGCUG-CCa -3'
miRNA:   3'- -GCuGCuUUGGCUC---------CUAGAACGGCuGG- -5'
12808 5' -51.9 NC_003387.1 + 3681 0.67 0.854826
Target:  5'- uGAcCGAGGCCGAGGggCUgcgguucaucaCCGACg -3'
miRNA:   3'- gCU-GCUUUGGCUCCuaGAac---------GGCUGg -5'
12808 5' -51.9 NC_003387.1 + 2605 0.67 0.872869
Target:  5'- aCGGCGAucguGACC-AGGcgCUcGCgGGCCu -3'
miRNA:   3'- -GCUGCU----UUGGcUCCuaGAaCGgCUGG- -5'
12808 5' -51.9 NC_003387.1 + 28543 0.67 0.864816
Target:  5'- cCGGCGAcaauugggcGACCGAGGcggcgAUCgccGUCGACg -3'
miRNA:   3'- -GCUGCU---------UUGGCUCC-----UAGaa-CGGCUGg -5'
12808 5' -51.9 NC_003387.1 + 34117 0.67 0.864816
Target:  5'- aCGACGAAacgagcgccACCGAGGcg---GgCGACCc -3'
miRNA:   3'- -GCUGCUU---------UGGCUCCuagaaCgGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 19014 0.67 0.856515
Target:  5'- uCGACGAAcCUGuucggauGGAUCgaccCCGGCCg -3'
miRNA:   3'- -GCUGCUUuGGCu------CCUAGaac-GGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 27133 0.67 0.872869
Target:  5'- gGuCGAGGCCGugcccgccGGGGUCggcGCCG-CCg -3'
miRNA:   3'- gCuGCUUUGGC--------UCCUAGaa-CGGCuGG- -5'
12808 5' -51.9 NC_003387.1 + 41776 0.67 0.872869
Target:  5'- uCGACGucAAGCCG-GGcgCgUGCCGcgACCu -3'
miRNA:   3'- -GCUGC--UUUGGCuCCuaGaACGGC--UGG- -5'
12808 5' -51.9 NC_003387.1 + 45853 0.67 0.872869
Target:  5'- aCGACGGcGACCG-GcGUCUUGuuGGCg -3'
miRNA:   3'- -GCUGCU-UUGGCuCcUAGAACggCUGg -5'
12808 5' -51.9 NC_003387.1 + 6142 0.67 0.872869
Target:  5'- gGGCGccACUguGAGGGUCggcguaGCCGAUCa -3'
miRNA:   3'- gCUGCuuUGG--CUCCUAGaa----CGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 22220 0.67 0.847974
Target:  5'- uCGACGuuGCCGAcGGUCcacUCGACCg -3'
miRNA:   3'- -GCUGCuuUGGCUcCUAGaacGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 8055 0.67 0.853978
Target:  5'- uGGCGAGcACCGgcagccccucggccAGGAUCgccgagGCCGcgGCCa -3'
miRNA:   3'- gCUGCUU-UGGC--------------UCCUAGaa----CGGC--UGG- -5'
12808 5' -51.9 NC_003387.1 + 3071 0.67 0.856515
Target:  5'- cCGACGucGACCcacucGGGGccaagCUcGCCGACCg -3'
miRNA:   3'- -GCUGCu-UUGG-----CUCCua---GAaCGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 29591 0.67 0.864816
Target:  5'- uCGAUGAcACCguugccgguGAGGGUCgcGCCGggcGCCa -3'
miRNA:   3'- -GCUGCUuUGG---------CUCCUAGaaCGGC---UGG- -5'
12808 5' -51.9 NC_003387.1 + 40663 0.67 0.864816
Target:  5'- uGACGAAauucaccacGCCGGuGAaCUUGUCGACg -3'
miRNA:   3'- gCUGCUU---------UGGCUcCUaGAACGGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.