miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12808 5' -51.9 NC_003387.1 + 18200 0.69 0.76188
Target:  5'- uCGACGGGcagcCCGAGGAUCgcggcGCCGcaGCg -3'
miRNA:   3'- -GCUGCUUu---GGCUCCUAGaa---CGGC--UGg -5'
12808 5' -51.9 NC_003387.1 + 7510 0.69 0.769077
Target:  5'- uGACGAGucugcgGCCGAGGGUgaacgagagcggcaCUgcUGCCGcCCu -3'
miRNA:   3'- gCUGCUU------UGGCUCCUA--------------GA--ACGGCuGG- -5'
12808 5' -51.9 NC_003387.1 + 7394 0.69 0.77214
Target:  5'- -cACGGAucgGCCGcggccGGGUCUUGCUGGCa -3'
miRNA:   3'- gcUGCUU---UGGCu----CCUAGAACGGCUGg -5'
12808 5' -51.9 NC_003387.1 + 46894 0.69 0.77214
Target:  5'- gCGGCGcAGCCc-GGGUCgucgUGCaCGGCCg -3'
miRNA:   3'- -GCUGCuUUGGcuCCUAGa---ACG-GCUGG- -5'
12808 5' -51.9 NC_003387.1 + 29577 0.69 0.77214
Target:  5'- uCGAcuuCGAGGCCGAGGggCcggaGCCGGgCg -3'
miRNA:   3'- -GCU---GCUUUGGCUCCuaGaa--CGGCUgG- -5'
12808 5' -51.9 NC_003387.1 + 52669 0.68 0.782253
Target:  5'- gCGACGuAGCCG-GGA---UGaCCGGCCg -3'
miRNA:   3'- -GCUGCuUUGGCuCCUagaAC-GGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 51964 0.68 0.782253
Target:  5'- cCGACGucgcuGCCGcGGug---GCCGACCg -3'
miRNA:   3'- -GCUGCuu---UGGCuCCuagaaCGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 40099 0.68 0.782253
Target:  5'- uCGACGAguAGuuGGGGAUCauaaUGUCGAgCg -3'
miRNA:   3'- -GCUGCU--UUggCUCCUAGa---ACGGCUgG- -5'
12808 5' -51.9 NC_003387.1 + 35636 0.68 0.792207
Target:  5'- cCGAgGcgGCCGGGcGGgcaCUgGCCGACCu -3'
miRNA:   3'- -GCUgCuuUGGCUC-CUa--GAaCGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 49595 0.68 0.792207
Target:  5'- uGACcuGAGCCGGGcuGAUC-UGCgCGACCa -3'
miRNA:   3'- gCUGc-UUUGGCUC--CUAGaACG-GCUGG- -5'
12808 5' -51.9 NC_003387.1 + 14228 0.68 0.80199
Target:  5'- uCGcACGcccacGGCCGcucGGGAUCggGCCGACUg -3'
miRNA:   3'- -GC-UGCu----UUGGC---UCCUAGaaCGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 30431 0.68 0.80199
Target:  5'- uGAaacCGAGGCCGAGGcggugGCCGAgCa -3'
miRNA:   3'- gCU---GCUUUGGCUCCuagaaCGGCUgG- -5'
12808 5' -51.9 NC_003387.1 + 27544 0.68 0.80199
Target:  5'- gCGGCGgcGCCGGGGccacCgcGCCGAgCCg -3'
miRNA:   3'- -GCUGCuuUGGCUCCua--GaaCGGCU-GG- -5'
12808 5' -51.9 NC_003387.1 + 37743 0.68 0.811592
Target:  5'- -uGCGccACCGugcgcggcGGGAUCUUGCCGucgaaACCg -3'
miRNA:   3'- gcUGCuuUGGC--------UCCUAGAACGGC-----UGG- -5'
12808 5' -51.9 NC_003387.1 + 39229 0.68 0.811592
Target:  5'- cCGGCGAAcccGCCGGGGcuGUCgguggUGCCcuCCu -3'
miRNA:   3'- -GCUGCUU---UGGCUCC--UAGa----ACGGcuGG- -5'
12808 5' -51.9 NC_003387.1 + 24838 0.68 0.811592
Target:  5'- gGGCGGcuGGCCG-GGcUCcUGCuCGACCg -3'
miRNA:   3'- gCUGCU--UUGGCuCCuAGaACG-GCUGG- -5'
12808 5' -51.9 NC_003387.1 + 46500 0.68 0.811592
Target:  5'- uCGGCGA---CGAGGGUCcgGuuGGCCc -3'
miRNA:   3'- -GCUGCUuugGCUCCUAGaaCggCUGG- -5'
12808 5' -51.9 NC_003387.1 + 24458 0.68 0.819136
Target:  5'- cCGACGAgcAGCgCGAGGugcugaaccugCUgcgcguccugGCCGACCg -3'
miRNA:   3'- -GCUGCU--UUG-GCUCCua---------GAa---------CGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 24675 0.68 0.824709
Target:  5'- aGGCGAgccAcuuggucgucagcucGCCGAGGAUCggcuUGCCGcGCUc -3'
miRNA:   3'- gCUGCU---U---------------UGGCUCCUAGa---ACGGC-UGG- -5'
12808 5' -51.9 NC_003387.1 + 7168 0.68 0.830208
Target:  5'- cCGACGAGcugGCgGcGGAUCgccUUGCCGcacgGCCa -3'
miRNA:   3'- -GCUGCUU---UGgCuCCUAG---AACGGC----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.