miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12808 5' -51.9 NC_003387.1 + 34765 0.66 0.888206
Target:  5'- cCGACGAccacACCG-GGGUCUgcCCGuCCu -3'
miRNA:   3'- -GCUGCUu---UGGCuCCUAGAacGGCuGG- -5'
12808 5' -51.9 NC_003387.1 + 1209 0.66 0.885223
Target:  5'- gCGACGAAcgcggcgccuaacCCGcuGAUCcUGCUGGCCg -3'
miRNA:   3'- -GCUGCUUu------------GGCucCUAGaACGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 18610 0.66 0.880668
Target:  5'- gCGACGucgacGCCGccGAUC-UGCCG-CCg -3'
miRNA:   3'- -GCUGCuu---UGGCucCUAGaACGGCuGG- -5'
12808 5' -51.9 NC_003387.1 + 48737 0.66 0.880668
Target:  5'- gCGACGAguccauGACCGcgcGGGUC--GCCGAgCCu -3'
miRNA:   3'- -GCUGCU------UUGGCu--CCUAGaaCGGCU-GG- -5'
12808 5' -51.9 NC_003387.1 + 20760 0.66 0.880668
Target:  5'- uGACGAccgaccuugcGGCCGGGGA---UG-CGACCg -3'
miRNA:   3'- gCUGCU----------UUGGCUCCUagaACgGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 28596 0.66 0.880668
Target:  5'- gGGC-AGGCCG-GGAUagcUGCCGACg -3'
miRNA:   3'- gCUGcUUUGGCuCCUAga-ACGGCUGg -5'
12808 5' -51.9 NC_003387.1 + 45853 0.67 0.872869
Target:  5'- aCGACGGcGACCG-GcGUCUUGuuGGCg -3'
miRNA:   3'- -GCUGCU-UUGGCuCcUAGAACggCUGg -5'
12808 5' -51.9 NC_003387.1 + 29691 0.67 0.872869
Target:  5'- uCGACGugGCCGAGG-UCgaggcGCuCGGCg -3'
miRNA:   3'- -GCUGCuuUGGCUCCuAGaa---CG-GCUGg -5'
12808 5' -51.9 NC_003387.1 + 14874 0.67 0.872869
Target:  5'- aGGCGAGccGCCG-GGcgCaggggUGCcCGACCu -3'
miRNA:   3'- gCUGCUU--UGGCuCCuaGa----ACG-GCUGG- -5'
12808 5' -51.9 NC_003387.1 + 6142 0.67 0.872869
Target:  5'- gGGCGccACUguGAGGGUCggcguaGCCGAUCa -3'
miRNA:   3'- gCUGCuuUGG--CUCCUAGaa----CGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 27133 0.67 0.872869
Target:  5'- gGuCGAGGCCGugcccgccGGGGUCggcGCCG-CCg -3'
miRNA:   3'- gCuGCUUUGGC--------UCCUAGaa-CGGCuGG- -5'
12808 5' -51.9 NC_003387.1 + 41776 0.67 0.872869
Target:  5'- uCGACGucAAGCCG-GGcgCgUGCCGcgACCu -3'
miRNA:   3'- -GCUGC--UUUGGCuCCuaGaACGGC--UGG- -5'
12808 5' -51.9 NC_003387.1 + 2605 0.67 0.872869
Target:  5'- aCGGCGAucguGACC-AGGcgCUcGCgGGCCu -3'
miRNA:   3'- -GCUGCU----UUGGcUCCuaGAaCGgCUGG- -5'
12808 5' -51.9 NC_003387.1 + 31852 0.67 0.864816
Target:  5'- gCGACGGugcugcuauGACCGGcgc-CUUGCUGACCu -3'
miRNA:   3'- -GCUGCU---------UUGGCUccuaGAACGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 29591 0.67 0.864816
Target:  5'- uCGAUGAcACCguugccgguGAGGGUCgcGCCGggcGCCa -3'
miRNA:   3'- -GCUGCUuUGG---------CUCCUAGaaCGGC---UGG- -5'
12808 5' -51.9 NC_003387.1 + 28543 0.67 0.864816
Target:  5'- cCGGCGAcaauugggcGACCGAGGcggcgAUCgccGUCGACg -3'
miRNA:   3'- -GCUGCU---------UUGGCUCC-----UAGaa-CGGCUGg -5'
12808 5' -51.9 NC_003387.1 + 22486 0.67 0.864816
Target:  5'- cCGACGAcccggccaacuGGCgCGAauGGAUCaUGCCcGCCg -3'
miRNA:   3'- -GCUGCU-----------UUG-GCU--CCUAGaACGGcUGG- -5'
12808 5' -51.9 NC_003387.1 + 34117 0.67 0.864816
Target:  5'- aCGACGAAacgagcgccACCGAGGcg---GgCGACCc -3'
miRNA:   3'- -GCUGCUU---------UGGCUCCuagaaCgGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 40663 0.67 0.864816
Target:  5'- uGACGAAauucaccacGCCGGuGAaCUUGUCGACg -3'
miRNA:   3'- gCUGCUU---------UGGCUcCUaGAACGGCUGg -5'
12808 5' -51.9 NC_003387.1 + 3071 0.67 0.856515
Target:  5'- cCGACGucGACCcacucGGGGccaagCUcGCCGACCg -3'
miRNA:   3'- -GCUGCu-UUGG-----CUCCua---GAaCGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.