miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12809 5' -57 NC_003387.1 + 49222 0.67 0.527702
Target:  5'- gAUCUGCcggucgaggcggCCGAgcggcUGCucGACGCCGGGGUg -3'
miRNA:   3'- -UAGACG------------GGCUau---ACG--CUGUGGCCCUA- -5'
12809 5' -57 NC_003387.1 + 1935 0.67 0.494988
Target:  5'- ---cGCCCGAUccGCGACgcaggcgguugggGCUGGGAc -3'
miRNA:   3'- uagaCGGGCUAuaCGCUG-------------UGGCCCUa -5'
12809 5' -57 NC_003387.1 + 15336 0.68 0.465244
Target:  5'- --aUGCCCGAUAc-CGACAgCGGGGc -3'
miRNA:   3'- uagACGGGCUAUacGCUGUgGCCCUa -5'
12809 5' -57 NC_003387.1 + 46021 0.68 0.455204
Target:  5'- -aCUGCCCGcgGUGCaaGACGCCGagcgucgucgaGGAUc -3'
miRNA:   3'- uaGACGGGCuaUACG--CUGUGGC-----------CCUA- -5'
12809 5' -57 NC_003387.1 + 4604 0.68 0.445282
Target:  5'- gGUCUGCCacguGAUcgGCGAgcCACCGcGGGc -3'
miRNA:   3'- -UAGACGGg---CUAuaCGCU--GUGGC-CCUa -5'
12809 5' -57 NC_003387.1 + 27143 0.68 0.445282
Target:  5'- --gUGCCCGccgggGUcgGCGcCGCCGGGGa -3'
miRNA:   3'- uagACGGGC-----UAuaCGCuGUGGCCCUa -5'
12809 5' -57 NC_003387.1 + 37917 0.68 0.416263
Target:  5'- -gCUGCCCGGUGgcuCGGCACCGccGGGc -3'
miRNA:   3'- uaGACGGGCUAUac-GCUGUGGC--CCUa -5'
12809 5' -57 NC_003387.1 + 26507 0.69 0.40685
Target:  5'- -gCUGCCCGAggaGUGCGAgGCCGa--- -3'
miRNA:   3'- uaGACGGGCUa--UACGCUgUGGCccua -5'
12809 5' -57 NC_003387.1 + 27452 0.71 0.275541
Target:  5'- -aCUGCCCGAUGUGCGACcugcCCGa--- -3'
miRNA:   3'- uaGACGGGCUAUACGCUGu---GGCccua -5'
12809 5' -57 NC_003387.1 + 27535 0.74 0.201029
Target:  5'- -gCUGCCgCGGcg-GCGGCGCCGGGGc -3'
miRNA:   3'- uaGACGG-GCUauaCGCUGUGGCCCUa -5'
12809 5' -57 NC_003387.1 + 52648 0.74 0.190461
Target:  5'- uGUCUGCCUccugguGGUGUgGCGACguaGCCGGGAUg -3'
miRNA:   3'- -UAGACGGG------CUAUA-CGCUG---UGGCCCUA- -5'
12809 5' -57 NC_003387.1 + 33661 1.04 0.001143
Target:  5'- gAUCUGCCCGAUAUGCGACACCGGGAUg -3'
miRNA:   3'- -UAGACGGGCUAUACGCUGUGGCCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.