miRNA display CGI


Results 41 - 60 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 11297 0.66 0.519249
Target:  5'- uGCGaCCggcggCGACAGCGgcaagcUCGGCGAGa- -3'
miRNA:   3'- gCGCgGGa----GCUGUCGC------AGCUGCUCgg -5'
12810 5' -59.5 NC_003387.1 + 48465 0.66 0.488228
Target:  5'- cCGCGaaaUCUCuuGCGGCGUagugaggccgucgCGGCGGGCCu -3'
miRNA:   3'- -GCGCg--GGAGc-UGUCGCA-------------GCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 12192 0.66 0.489215
Target:  5'- -aCGCCCUCgGGCAG-GUCGcugcucggugcCGGGCCa -3'
miRNA:   3'- gcGCGGGAG-CUGUCgCAGCu----------GCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 41142 0.67 0.478406
Target:  5'- gCGCGCCgaCGGCcgcugcgAGUGUCagGGCGAGUg -3'
miRNA:   3'- -GCGCGGgaGCUG-------UCGCAG--CUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 19549 0.67 0.478406
Target:  5'- uCGCGCUCgUCGAgaaccugucgaguCGGC--UGGCGAGCCu -3'
miRNA:   3'- -GCGCGGG-AGCU-------------GUCGcaGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 24384 0.67 0.479384
Target:  5'- uCGCGCCgaCGuACAGCGgCGcauCGAcGCCc -3'
miRNA:   3'- -GCGCGGgaGC-UGUCGCaGCu--GCU-CGG- -5'
12810 5' -59.5 NC_003387.1 + 2271 0.67 0.479384
Target:  5'- gGCGCCCcgaggugccCGAgGGCGccagCGACGaAGUCa -3'
miRNA:   3'- gCGCGGGa--------GCUgUCGCa---GCUGC-UCGG- -5'
12810 5' -59.5 NC_003387.1 + 41807 0.67 0.479384
Target:  5'- gGCGCacgCCU-GGCAGaucaUCGACGAGCUg -3'
miRNA:   3'- gCGCG---GGAgCUGUCgc--AGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 28001 0.67 0.441078
Target:  5'- -cCGCCCgaUCGAgGGCacCGACGAGCg -3'
miRNA:   3'- gcGCGGG--AGCUgUCGcaGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 25364 0.67 0.469651
Target:  5'- aGCGCCaagagCGGCgAG-GUCGAgGGGCUg -3'
miRNA:   3'- gCGCGGga---GCUG-UCgCAGCUgCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 43409 0.67 0.467716
Target:  5'- uGUGCUCggaggucaacgcCGACAGCaaguUCGACGAGgCCa -3'
miRNA:   3'- gCGCGGGa-----------GCUGUCGc---AGCUGCUC-GG- -5'
12810 5' -59.5 NC_003387.1 + 40383 0.67 0.450494
Target:  5'- aGgG-CCUCGACGuCGgCGGCGAGCUg -3'
miRNA:   3'- gCgCgGGAGCUGUcGCaGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 7509 0.67 0.460019
Target:  5'- -aCGCCacgaUCGGCcGCGggUCGAaCGGGCCg -3'
miRNA:   3'- gcGCGGg---AGCUGuCGC--AGCU-GCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 44589 0.67 0.460019
Target:  5'- uCGCuGCCCggcCGggacaGCAGCG-CGuACGAGCUg -3'
miRNA:   3'- -GCG-CGGGa--GC-----UGUCGCaGC-UGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 42292 0.67 0.460019
Target:  5'- uCGaUGCCCgcCGACAGC--CG-CGAGCCg -3'
miRNA:   3'- -GC-GCGGGa-GCUGUCGcaGCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 38163 0.67 0.460019
Target:  5'- aCG-GCCa--GGCGGCGUCGACc-GCCa -3'
miRNA:   3'- -GCgCGGgagCUGUCGCAGCUGcuCGG- -5'
12810 5' -59.5 NC_003387.1 + 13616 0.67 0.460019
Target:  5'- uCGUGCaCCUCGAUGaaGUaGACGAGCg -3'
miRNA:   3'- -GCGCG-GGAGCUGUcgCAgCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 3676 0.67 0.479384
Target:  5'- aGCGCCa---GCAGCGcaacCGuCGAGCCg -3'
miRNA:   3'- gCGCGGgagcUGUCGCa---GCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 13556 0.67 0.479384
Target:  5'- aGgGCCUg-GGCAGCccgaUCGACGGGCa -3'
miRNA:   3'- gCgCGGGagCUGUCGc---AGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 18202 0.67 0.450494
Target:  5'- gGUGCgCCUCGGCGaCG-CGACGA-CCg -3'
miRNA:   3'- gCGCG-GGAGCUGUcGCaGCUGCUcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.