miRNA display CGI


Results 61 - 80 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 20156 0.67 0.450494
Target:  5'- aGCGCgaaCC-CGAgGGCGUCGA-GGGCg -3'
miRNA:   3'- gCGCG---GGaGCUgUCGCAGCUgCUCGg -5'
12810 5' -59.5 NC_003387.1 + 41016 0.67 0.450494
Target:  5'- -aCGCCCaaaucgCGACAGCGagccCGACGA-CCg -3'
miRNA:   3'- gcGCGGGa-----GCUGUCGCa---GCUGCUcGG- -5'
12810 5' -59.5 NC_003387.1 + 11701 0.67 0.450494
Target:  5'- uGuCGCCgUCGAC-GCaGUCGACccGGCCg -3'
miRNA:   3'- gC-GCGGgAGCUGuCG-CAGCUGc-UCGG- -5'
12810 5' -59.5 NC_003387.1 + 9997 0.67 0.460019
Target:  5'- -aCGCCCUgaCGAgCAG-GUCGGCGuuGCCg -3'
miRNA:   3'- gcGCGGGA--GCU-GUCgCAGCUGCu-CGG- -5'
12810 5' -59.5 NC_003387.1 + 18927 0.67 0.469651
Target:  5'- uGCGCCUcaUCG--GGUGUCGGCaccAGCCg -3'
miRNA:   3'- gCGCGGG--AGCugUCGCAGCUGc--UCGG- -5'
12810 5' -59.5 NC_003387.1 + 38163 0.67 0.460019
Target:  5'- aCG-GCCa--GGCGGCGUCGACc-GCCa -3'
miRNA:   3'- -GCgCGGgagCUGUCGCAGCUGcuCGG- -5'
12810 5' -59.5 NC_003387.1 + 42292 0.67 0.460019
Target:  5'- uCGaUGCCCgcCGACAGC--CG-CGAGCCg -3'
miRNA:   3'- -GC-GCGGGa-GCUGUCGcaGCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 44589 0.67 0.460019
Target:  5'- uCGCuGCCCggcCGggacaGCAGCG-CGuACGAGCUg -3'
miRNA:   3'- -GCG-CGGGa--GC-----UGUCGCaGC-UGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 7509 0.67 0.460019
Target:  5'- -aCGCCacgaUCGGCcGCGggUCGAaCGGGCCg -3'
miRNA:   3'- gcGCGGg---AGCUGuCGC--AGCU-GCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 27141 0.67 0.441078
Target:  5'- cCGUGCCCgc--CGGgGUCGGCGccGCCg -3'
miRNA:   3'- -GCGCGGGagcuGUCgCAGCUGCu-CGG- -5'
12810 5' -59.5 NC_003387.1 + 48731 0.67 0.435482
Target:  5'- uGCGCCg-CGACGaguccaugaccgcgcGgGUCGcCGAGCCu -3'
miRNA:   3'- gCGCGGgaGCUGU---------------CgCAGCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 13616 0.67 0.460019
Target:  5'- uCGUGCaCCUCGAUGaaGUaGACGAGCg -3'
miRNA:   3'- -GCGCG-GGAGCUGUcgCAgCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 42481 0.67 0.479384
Target:  5'- cCGCGCUCggcgCGGCucaucGCGUCG-CGGauGCCc -3'
miRNA:   3'- -GCGCGGGa---GCUGu----CGCAGCuGCU--CGG- -5'
12810 5' -59.5 NC_003387.1 + 16092 0.67 0.479384
Target:  5'- gGCGCCgUCgGGCAuCG-CGGCG-GCCa -3'
miRNA:   3'- gCGCGGgAG-CUGUcGCaGCUGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 50701 0.67 0.479384
Target:  5'- gGCgGCCgUCGGCGGCacCGAgcaGGGCCa -3'
miRNA:   3'- gCG-CGGgAGCUGUCGcaGCUg--CUCGG- -5'
12810 5' -59.5 NC_003387.1 + 47593 0.67 0.479384
Target:  5'- aGCGcCCCUCGuC-GCGUgCGGCGAucaGCUc -3'
miRNA:   3'- gCGC-GGGAGCuGuCGCA-GCUGCU---CGG- -5'
12810 5' -59.5 NC_003387.1 + 40383 0.67 0.450494
Target:  5'- aGgG-CCUCGACGuCGgCGGCGAGCUg -3'
miRNA:   3'- gCgCgGGAGCUGUcGCaGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 10778 0.67 0.479384
Target:  5'- gGCgGCCUgcaucgucgggUCGuCGGCGUCGGCG-GCa -3'
miRNA:   3'- gCG-CGGG-----------AGCuGUCGCAGCUGCuCGg -5'
12810 5' -59.5 NC_003387.1 + 21972 0.67 0.431774
Target:  5'- -aCGCCCgacACGGUGcugccCGACGAGCCg -3'
miRNA:   3'- gcGCGGGagcUGUCGCa----GCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 39714 0.67 0.431774
Target:  5'- gGCGCUgUCGACcuuGCc-CGACGAcGCCu -3'
miRNA:   3'- gCGCGGgAGCUGu--CGcaGCUGCU-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.