miRNA display CGI


Results 81 - 100 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 10778 0.67 0.479384
Target:  5'- gGCgGCCUgcaucgucgggUCGuCGGCGUCGGCG-GCa -3'
miRNA:   3'- gCG-CGGG-----------AGCuGUCGCAGCUGCuCGg -5'
12810 5' -59.5 NC_003387.1 + 3676 0.67 0.479384
Target:  5'- aGCGCCa---GCAGCGcaacCGuCGAGCCg -3'
miRNA:   3'- gCGCGGgagcUGUCGCa---GCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 18927 0.67 0.469651
Target:  5'- uGCGCCUcaUCG--GGUGUCGGCaccAGCCg -3'
miRNA:   3'- gCGCGGG--AGCugUCGCAGCUGc--UCGG- -5'
12810 5' -59.5 NC_003387.1 + 1596 0.67 0.469651
Target:  5'- aCGCGCCCuggcauguUCGGCcgGGCGcgUGugGgcAGCCu -3'
miRNA:   3'- -GCGCGGG--------AGCUG--UCGCa-GCugC--UCGG- -5'
12810 5' -59.5 NC_003387.1 + 13616 0.67 0.460019
Target:  5'- uCGUGCaCCUCGAUGaaGUaGACGAGCg -3'
miRNA:   3'- -GCGCG-GGAGCUGUcgCAgCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 42300 0.68 0.387044
Target:  5'- -uCGCCC-CGACgaucaaggcguGGCG-CGACGAGCa -3'
miRNA:   3'- gcGCGGGaGCUG-----------UCGCaGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 18036 0.68 0.394868
Target:  5'- gCGUGCCCgaGGCGGCGUuucagaacuucacCGGCGuuGCCc -3'
miRNA:   3'- -GCGCGGGagCUGUCGCA-------------GCUGCu-CGG- -5'
12810 5' -59.5 NC_003387.1 + 37227 0.68 0.387044
Target:  5'- -aCGCCgC-CGugGGCGacgauuUCGACGAGCUg -3'
miRNA:   3'- gcGCGG-GaGCugUCGC------AGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 6975 0.68 0.378471
Target:  5'- gCGCGCCCUCGGCcacuugugcaGGCGcCGcagaaugucGCGcAGCa -3'
miRNA:   3'- -GCGCGGGAGCUG----------UCGCaGC---------UGC-UCGg -5'
12810 5' -59.5 NC_003387.1 + 12798 0.68 0.378471
Target:  5'- uGCGCgCCUCGcaacgaccGCAGuCGUCGcCGGGgCa -3'
miRNA:   3'- gCGCG-GGAGC--------UGUC-GCAGCuGCUCgG- -5'
12810 5' -59.5 NC_003387.1 + 1456 0.68 0.378471
Target:  5'- uCGuCGUCCUCGucgaGGuCGUCGA-GGGCCa -3'
miRNA:   3'- -GC-GCGGGAGCug--UC-GCAGCUgCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 7744 0.68 0.378471
Target:  5'- -cCGCCUcggCGGCAGCGgcgaucgCGGCcuGAGCCg -3'
miRNA:   3'- gcGCGGGa--GCUGUCGCa------GCUG--CUCGG- -5'
12810 5' -59.5 NC_003387.1 + 22864 0.68 0.381884
Target:  5'- aGCGCCCUCGccgacgaaucgacaGgGGCGccUCGuguagcagauugcuACGGGCCg -3'
miRNA:   3'- gCGCGGGAGC--------------UgUCGC--AGC--------------UGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 827 0.68 0.387044
Target:  5'- gGCaGCaCCUCGACgAGCuucUCGGCGAcgGCCu -3'
miRNA:   3'- gCG-CG-GGAGCUG-UCGc--AGCUGCU--CGG- -5'
12810 5' -59.5 NC_003387.1 + 39670 0.68 0.387044
Target:  5'- uGCuuGUCCUCGAUAGCcuuGUCGGCGuuGCg -3'
miRNA:   3'- gCG--CGGGAGCUGUCG---CAGCUGCu-CGg -5'
12810 5' -59.5 NC_003387.1 + 39780 0.68 0.387044
Target:  5'- aGaCGCCgaCGugGcacugccgaGCGcCGACGAGCCa -3'
miRNA:   3'- gC-GCGGgaGCugU---------CGCaGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 459 0.68 0.387044
Target:  5'- cCGCGCgCUCG--GGCG-CGGCGuuGCCg -3'
miRNA:   3'- -GCGCGgGAGCugUCGCaGCUGCu-CGG- -5'
12810 5' -59.5 NC_003387.1 + 50819 0.68 0.395743
Target:  5'- gGCGCCagCGAgGGCGUCauucagcGCGGGCUg -3'
miRNA:   3'- gCGCGGgaGCUgUCGCAGc------UGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 52503 0.68 0.395743
Target:  5'- gCGCGCaugucaacCCUCGACgaacgcGGCaauGUCG-CGGGCCg -3'
miRNA:   3'- -GCGCG--------GGAGCUG------UCG---CAGCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 40128 0.68 0.419853
Target:  5'- aGCGCCCggccCGACgggugaucgggguaAGCGUCcuGCGAccGCCa -3'
miRNA:   3'- gCGCGGGa---GCUG--------------UCGCAGc-UGCU--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.