miRNA display CGI


Results 21 - 40 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 10011 0.75 0.139599
Target:  5'- cCGCGgCCgggCGACGaCGaCGACGAGCCg -3'
miRNA:   3'- -GCGCgGGa--GCUGUcGCaGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 22676 0.75 0.13592
Target:  5'- gCGCGCUCgUgGGCGGUGUCGACGgcggcgcuggcGGCCu -3'
miRNA:   3'- -GCGCGGG-AgCUGUCGCAGCUGC-----------UCGG- -5'
12810 5' -59.5 NC_003387.1 + 44867 0.75 0.13233
Target:  5'- cCGUaGCCgUCGGgGGCGUCGGCGAuuccGCCu -3'
miRNA:   3'- -GCG-CGGgAGCUgUCGCAGCUGCU----CGG- -5'
12810 5' -59.5 NC_003387.1 + 27076 0.75 0.151189
Target:  5'- uGuCGCCCUUGGCGGCGUaGuCGuGCCa -3'
miRNA:   3'- gC-GCGGGAGCUGUCGCAgCuGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 43708 0.74 0.155243
Target:  5'- gGCGCCCgccaggugcUCGACGGCGgcaugCGG-GAGCCc -3'
miRNA:   3'- gCGCGGG---------AGCUGUCGCa----GCUgCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 40998 0.74 0.172458
Target:  5'- gGUGCCUgau-CGGCGUCGACG-GCCg -3'
miRNA:   3'- gCGCGGGagcuGUCGCAGCUGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 34109 0.74 0.168001
Target:  5'- gGCGgCagaUCGGCGGCGUCGACGucGCg -3'
miRNA:   3'- gCGCgGg--AGCUGUCGCAGCUGCu-CGg -5'
12810 5' -59.5 NC_003387.1 + 6143 0.74 0.168001
Target:  5'- gGCGCCaCU-GugAGgGUCGGCGuAGCCg -3'
miRNA:   3'- gCGCGG-GAgCugUCgCAGCUGC-UCGG- -5'
12810 5' -59.5 NC_003387.1 + 39066 0.74 0.155243
Target:  5'- gGCGCCCUCGGCGaccgagccGcCGcCGACGguGGCCg -3'
miRNA:   3'- gCGCGGGAGCUGU--------C-GCaGCUGC--UCGG- -5'
12810 5' -59.5 NC_003387.1 + 37916 0.74 0.159395
Target:  5'- gCGCGCCgUgGGuCGGUGUCGAccaucauguaCGAGCCg -3'
miRNA:   3'- -GCGCGGgAgCU-GUCGCAGCU----------GCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 17347 0.74 0.163647
Target:  5'- aCGCauGCCaggCGACGGCGaucaggugCGGCGAGCCu -3'
miRNA:   3'- -GCG--CGGga-GCUGUCGCa-------GCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 9339 0.73 0.191357
Target:  5'- uCGaCGUCgUCGAgcacCAGgaCGUCGACGAGCCg -3'
miRNA:   3'- -GC-GCGGgAGCU----GUC--GCAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 48070 0.73 0.18169
Target:  5'- cCGCGCCC-CGA-AGCGccUCGACGGGUg -3'
miRNA:   3'- -GCGCGGGaGCUgUCGC--AGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 52447 0.73 0.186468
Target:  5'- uCGUGCaCUCGAcCGGCG-CGGCGcAGCCa -3'
miRNA:   3'- -GCGCGgGAGCU-GUCGCaGCUGC-UCGG- -5'
12810 5' -59.5 NC_003387.1 + 10168 0.73 0.200956
Target:  5'- gCGCGCCaaucucgCUCGccagcuCGGCGUCGgucauGCGGGCCg -3'
miRNA:   3'- -GCGCGG-------GAGCu-----GUCGCAGC-----UGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 7142 0.73 0.206702
Target:  5'- aCGCGaggcccggcUCCUCGGCcGUGcCGACGAGCUg -3'
miRNA:   3'- -GCGC---------GGGAGCUGuCGCaGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 31030 0.73 0.186468
Target:  5'- cCGCGCUCgccgaggCGGCcagGGCGUCGGCGAacacgugcucgGCCg -3'
miRNA:   3'- -GCGCGGGa------GCUG---UCGCAGCUGCU-----------CGG- -5'
12810 5' -59.5 NC_003387.1 + 7837 0.73 0.18169
Target:  5'- gCGCGCCCggCGGCuGCGUCaGCucGGCCa -3'
miRNA:   3'- -GCGCGGGa-GCUGuCGCAGcUGc-UCGG- -5'
12810 5' -59.5 NC_003387.1 + 37293 0.73 0.190863
Target:  5'- gCGCGCUCgucggcgcggucgUCGACcGCGcCGACGuGCCg -3'
miRNA:   3'- -GCGCGGG-------------AGCUGuCGCaGCUGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 44645 0.72 0.212049
Target:  5'- gGCGCCgacCGGCAGCGgguuagCG-CGGGCCg -3'
miRNA:   3'- gCGCGGga-GCUGUCGCa-----GCuGCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.