miRNA display CGI


Results 61 - 80 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 15003 0.71 0.272267
Target:  5'- uGcCGCCCUCGGCu-UGUCGcGCGGGUCg -3'
miRNA:   3'- gC-GCGGGAGCUGucGCAGC-UGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 23031 0.71 0.263722
Target:  5'- aGCGCCUcgaccucggccacgUCGACGucGaCGUCGGCGAGgCg -3'
miRNA:   3'- gCGCGGG--------------AGCUGU--C-GCAGCUGCUCgG- -5'
12810 5' -59.5 NC_003387.1 + 41270 0.71 0.259211
Target:  5'- aGCGCCC-CGGCGGCGagcugcagCG-CGGGCa -3'
miRNA:   3'- gCGCGGGaGCUGUCGCa-------GCuGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 16039 0.71 0.259211
Target:  5'- aGCuuGCCCgCGgugaacGCGGCcagGUCGGCGAGCCg -3'
miRNA:   3'- gCG--CGGGaGC------UGUCG---CAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 4363 0.71 0.24667
Target:  5'- -uUGCCCUUGGC-GCGcUCGGCG-GCCa -3'
miRNA:   3'- gcGCGGGAGCUGuCGC-AGCUGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 48134 0.71 0.24667
Target:  5'- gCGCGCgUUCGAgcuuguCGGCcUCGGCGAGCa -3'
miRNA:   3'- -GCGCGgGAGCU------GUCGcAGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 22499 0.71 0.24667
Target:  5'- gCGaCGgCCUCGGCGGCGcgcUCGACGucGGCg -3'
miRNA:   3'- -GC-GCgGGAGCUGUCGC---AGCUGC--UCGg -5'
12810 5' -59.5 NC_003387.1 + 22197 0.71 0.25225
Target:  5'- gGCGCCCguugcacUUGuCGGgGUCGACGuuGCCg -3'
miRNA:   3'- gCGCGGG-------AGCuGUCgCAGCUGCu-CGG- -5'
12810 5' -59.5 NC_003387.1 + 48696 0.71 0.252877
Target:  5'- cCGCacGCCCUCGcGCuuGGCGUUGuCGAGCa -3'
miRNA:   3'- -GCG--CGGGAGC-UG--UCGCAGCuGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 711 0.71 0.278991
Target:  5'- uGCGCCgCaaGGCAucGUGUCGACG-GCCu -3'
miRNA:   3'- gCGCGG-GagCUGU--CGCAGCUGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 48305 0.7 0.307207
Target:  5'- aCGCcuuGCCCagcuCGGCGUCGACGuucuGCCa -3'
miRNA:   3'- -GCG---CGGGagcuGUCGCAGCUGCu---CGG- -5'
12810 5' -59.5 NC_003387.1 + 47703 0.7 0.307207
Target:  5'- gCGcCGCCCUCGugAGCcugccgugcugGUCGAaccaCGcGGCCa -3'
miRNA:   3'- -GC-GCGGGAGCugUCG-----------CAGCU----GC-UCGG- -5'
12810 5' -59.5 NC_003387.1 + 2320 0.7 0.292834
Target:  5'- uGcCGCCCgacguacagcUCGGCGGUGUCGA--GGCCg -3'
miRNA:   3'- gC-GCGGG----------AGCUGUCGCAGCUgcUCGG- -5'
12810 5' -59.5 NC_003387.1 + 20450 0.7 0.321356
Target:  5'- uCGCGCCCccacgccUUGuCGGCcUCGGCGAcgGCCa -3'
miRNA:   3'- -GCGCGGG-------AGCuGUCGcAGCUGCU--CGG- -5'
12810 5' -59.5 NC_003387.1 + 17160 0.7 0.314594
Target:  5'- gGCGCCgagguaguccaUCG-CGGCGUCGugcuccugGCGGGCCa -3'
miRNA:   3'- gCGCGGg----------AGCuGUCGCAGC--------UGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 34163 0.7 0.307207
Target:  5'- gCGuCGCCCUCGGCcuuGCGcUCGaACGAcucgcgcacaaGCCa -3'
miRNA:   3'- -GC-GCGGGAGCUGu--CGC-AGC-UGCU-----------CGG- -5'
12810 5' -59.5 NC_003387.1 + 8114 0.7 0.299236
Target:  5'- uCGCGCCaCggccCGACGGCGUCGcuCGAcuccuugaggaucGCCu -3'
miRNA:   3'- -GCGCGG-Ga---GCUGUCGCAGCu-GCU-------------CGG- -5'
12810 5' -59.5 NC_003387.1 + 7444 0.7 0.283776
Target:  5'- -aUGCCCgccCGACGGgGUCGGCGuggcgauccauuccAGCCg -3'
miRNA:   3'- gcGCGGGa--GCUGUCgCAGCUGC--------------UCGG- -5'
12810 5' -59.5 NC_003387.1 + 17574 0.7 0.292834
Target:  5'- -cCGCCCUCGcUGGUGUCGuGCG-GCCa -3'
miRNA:   3'- gcGCGGGAGCuGUCGCAGC-UGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 4410 0.7 0.299954
Target:  5'- gCGCGCCgcCUCGAUuuCGUCGagGCGGGCg -3'
miRNA:   3'- -GCGCGG--GAGCUGucGCAGC--UGCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.